RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SRCIN1Q9C0H9 1055 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 RRAGDQ9NQL2 400 aaPredicted RBP10.28□□□□□ -0.76
CD44-208ENST00000428726 FAM177BA6PVY3 158 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 LRRCC1Q9C099 1032 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 PIK3C2AO00443 1686 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 MAP3K5Q99683 1374 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 RGS12O14924 1447 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 MCM4P33991 863 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 PTPRCP08575 1304 aa10.27□□□□□ -0.76
CD44-208ENST00000428726 TRAK2O60296 914 aa10.27□□□□□ -0.77
CD44-208ENST00000428726 RIC3Q7Z5B4 369 aa10.27□□□□□ -0.77
CD44-208ENST00000428726 AK9Q5TCS8 1911 aa10.27□□□□□ -0.77
CD44-208ENST00000428726 MX1P20591 662 aa10.27□□□□□ -0.77
CD44-208ENST00000428726 MCTP1Q6DN14 999 aa10.27□□□□□ -0.77
CD44-208ENST00000428726 RPAP2Q8IXW5 612 aaPredicted RBP10.27□□□□□ -0.77
CD44-208ENST00000428726 RNMTO43148 476 aaKnown RBP10.26□□□□□ -0.77
CD44-208ENST00000428726 PLEKHO1Q53GL0 409 aaPredicted RBP10.26□□□□□ -0.77
CD44-208ENST00000428726 DNAAF4Q8WXU2 420 aa10.26□□□□□ -0.77
CD44-208ENST00000428726 ZNF496Q96IT1 587 aaPredicted RBP10.26□□□□□ -0.77
CD44-208ENST00000428726 HTATSF1O43719 755 aaKnown RBP10.26□□□□□ -0.77
CD44-208ENST00000428726 HMMRO75330 724 aa10.26□□□□□ -0.77
CD44-208ENST00000428726 CCT4P50991 539 aaKnown RBP10.26□□□□□ -0.77
CD44-208ENST00000428726 COPS6Q7L5N1 327 aa10.26□□□□□ -0.77
CD44-208ENST00000428726 ARHGEF25Q86VW2 580 aa10.26□□□□□ -0.77
CD44-208ENST00000428726 MYD88Q99836 296 aa10.26□□□□□ -0.77
CD44-208ENST00000428726 TLR7Q9NYK1 1049 aaKnown RBP10.26□□□□□ -0.77
CD44-208ENST00000428726 CHMP5Q9NZZ3 219 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 ATP10DQ9P241 1426 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 USP54Q70EL1 1684 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 FOSBP53539 338 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 TOM1L2Q6ZVM7 507 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 XAGE3Q8WTP9 111 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 USP26Q9BXU7 913 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 BOLA2Q9H3K6 86 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 ZBTB3Q9H5J0 574 aa10.25□□□□□ -0.77
CD44-208ENST00000428726 NAP1L5Q96NT1 182 aaPredicted RBP10.25□□□□□ -0.77
CD44-208ENST00000428726 RBM27Q9P2N5 1060 aaKnown RBP10.25□□□□□ -0.77
CD44-208ENST00000428726 K7ELQ4 463 aaPredicted RBP10.24□□□□□ -0.77
CD44-208ENST00000428726 TMEM94Q12767 1356 aa10.24□□□□□ -0.77
CD44-208ENST00000428726 EPHA10Q5JZY3 1008 aa10.24□□□□□ -0.77
CD44-208ENST00000428726 PRDM11Q9NQV5 511 aa10.24□□□□□ -0.77
CD44-208ENST00000428726 EP400Q96L91 3159 aa10.24□□□□□ -0.77
CD44-208ENST00000428726 PXDNQ92626 1479 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 KDM4AO75164 1064 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 A1BGP04217 495 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 XRCC6P12956 609 aaKnown RBP eCLIP10.23□□□□□ -0.77
CD44-208ENST00000428726 RBM25P49756 843 aaKnown RBP10.23□□□□□ -0.77
CD44-208ENST00000428726 ATP8B2P98198 1209 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 SMIM5Q71RC9 77 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 GIGYF1O75420 1035 aaPredicted RBP10.23□□□□□ -0.77
CD44-208ENST00000428726 UBE3BQ7Z3V4 1068 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 RHPN1Q8TCX5 695 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 SUCLG2Q96I99 432 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 BICC1Q9H694 974 aaKnown RBP10.23□□□□□ -0.77
CD44-208ENST00000428726 MARF1Q9Y4F3 1742 aaKnown RBP10.23□□□□□ -0.77
CD44-208ENST00000428726 GNAI3P08754 354 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 AACSQ86V21 672 aa10.23□□□□□ -0.77
CD44-208ENST00000428726 ZNF335Q9H4Z2 1342 aaPredicted RBP10.22□□□□□ -0.77
CD44-208ENST00000428726 CHD2O14647 1828 aaKnown RBP10.22□□□□□ -0.77
CD44-208ENST00000428726 CYP27B1O15528 508 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 NPM3O75607 178 aaKnown RBP10.22□□□□□ -0.77
CD44-208ENST00000428726 SYNE4Q8N205 404 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 C19orf44Q9H6X5 657 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 PRPF40AO75400 957 aaKnown RBP10.22□□□□□ -0.77
CD44-208ENST00000428726 KCNQ4P56696 695 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 HSP90AB3PQ58FF7 597 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 BEND3Q5T5X7 828 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 CASC1Q6TDU7 716 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 GAS2L3Q86XJ1 694 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 KCNH5Q8NCM2 988 aa10.22□□□□□ -0.77
CD44-208ENST00000428726 ZNF594Q96JF6 807 aaPredicted RBP10.22□□□□□ -0.77
CD44-208ENST00000428726 GOLGA6L3A6NEY3 463 aa10.21□□□□□ -0.77
CD44-208ENST00000428726 KCNJ4P48050 445 aa10.21□□□□□ -0.77
CD44-208ENST00000428726 EVA1CP58658 441 aa10.21□□□□□ -0.77
CD44-208ENST00000428726 AKAP4Q5JQC9 854 aa10.21□□□□□ -0.77
CD44-208ENST00000428726 ERC2O15083 957 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 TTC5Q8N0Z6 440 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 FAM227BQ96M60 508 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 DNAJC2Q99543 621 aaKnown RBP10.21□□□□□ -0.78
CD44-208ENST00000428726 ARID3AQ99856 593 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 BABAM1Q9NWV8 329 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 TAF6LQ9Y6J9 622 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 LRRC37A3O60309 1634 aa10.21□□□□□ -0.78
CD44-208ENST00000428726 CABP4P57796 275 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 ZNF790Q6PG37 636 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 NEUROD6Q96NK8 337 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 NSFL1CQ9UNZ2 370 aaKnown RBP10.2□□□□□ -0.78
CD44-208ENST00000428726 DDX49Q9Y6V7 483 aaKnown RBP10.2□□□□□ -0.78
CD44-208ENST00000428726 ZNF142P52746 1687 aaPredicted RBP10.2□□□□□ -0.78
CD44-208ENST00000428726 NWD1Q149M9 1564 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 ADAMTS2O95450 1211 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 TATP17735 454 aaPredicted RBP10.2□□□□□ -0.78
CD44-208ENST00000428726 CHMLP26374 656 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 STK3Q13188 491 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 CAVIN1Q6NZI2 390 aaKnown RBP10.2□□□□□ -0.78
CD44-208ENST00000428726 TTLL7Q6ZT98 887 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 RASEFQ8IZ41 740 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 RNF214Q8ND24 703 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 LRRC2Q9BYS8 371 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 NAP1L2Q9ULW6 460 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms