RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 TTC22Q5TAA0 569 aa12.89□□□□□ -0.35
HDAC9-210ENST00000428307 KSR2Q6VAB6 950 aa12.89□□□□□ -0.35
HDAC9-210ENST00000428307 PPP1R42Q7Z4L9 355 aa12.89□□□□□ -0.35
HDAC9-210ENST00000428307 DDX21Q9NR30 783 aaKnown RBP eCLIP12.89□□□□□ -0.35
HDAC9-210ENST00000428307 LRRCC1Q9C099 1032 aa12.89□□□□□ -0.35
HDAC9-210ENST00000428307 SRGAP3O43295 1099 aa12.88□□□□□ -0.35
HDAC9-210ENST00000428307 IL2RBP14784 551 aa12.88□□□□□ -0.35
HDAC9-210ENST00000428307 BECN1Q14457 450 aa12.88□□□□□ -0.35
HDAC9-210ENST00000428307 TSHZ3Q63HK5 1081 aa12.88□□□□□ -0.35
HDAC9-210ENST00000428307 C9orf78Q9NZ63 289 aaPredicted RBP12.88□□□□□ -0.35
HDAC9-210ENST00000428307 VIRMAQ69YN4 1812 aaKnown RBP12.88□□□□□ -0.35
HDAC9-210ENST00000428307 CDC45O75419 566 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 SNRPA1P09661 255 aaKnown RBP12.87□□□□□ -0.35
HDAC9-210ENST00000428307 CARD10Q9BWT7 1032 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 PXDNLA1KZ92 1463 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 COL5A2P05997 1499 aaPredicted RBP12.87□□□□□ -0.35
HDAC9-210ENST00000428307 SURF6O75683 361 aaKnown RBP12.87□□□□□ -0.35
HDAC9-210ENST00000428307 SDSP20132 328 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 COPS6Q7L5N1 327 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 RIC3Q7Z5B4 369 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 SSH3Q8TE77 659 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 FMNL2Q96PY5 1086 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 TBC1D2Q9BYX2 928 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 BTG4Q9NY30 223 aa12.87□□□□□ -0.35
HDAC9-210ENST00000428307 PCDH11XQ9BZA7 1347 aa12.86□□□□□ -0.35
HDAC9-210ENST00000428307 PCDH11YQ9BZA8 1340 aa12.86□□□□□ -0.35
HDAC9-210ENST00000428307 DDX58O95786 925 aaKnown RBP12.86□□□□□ -0.35
HDAC9-210ENST00000428307 PDE1AP54750 535 aa12.86□□□□□ -0.35
HDAC9-210ENST00000428307 XAGE3Q8WTP9 111 aa12.86□□□□□ -0.35
HDAC9-210ENST00000428307 IL1RAPL2Q9NP60 686 aa12.86□□□□□ -0.35
HDAC9-210ENST00000428307 CRYBG1Q9Y4K1 1723 aa12.86□□□□□ -0.35
HDAC9-210ENST00000428307 IBTKQ9P2D0 1353 aaPredicted RBP12.85□□□□□ -0.35
HDAC9-210ENST00000428307 ABCC6O95255 1503 aa12.85□□□□□ -0.35
HDAC9-210ENST00000428307 CACNA1FO60840 1977 aa12.85□□□□□ -0.35
HDAC9-210ENST00000428307 PTCD1O75127 700 aaKnown RBP12.85□□□□□ -0.35
HDAC9-210ENST00000428307 ALDH1L1O75891 902 aa12.85□□□□□ -0.35
HDAC9-210ENST00000428307 SPRYD3Q8NCJ5 442 aa12.85□□□□□ -0.35
HDAC9-210ENST00000428307 LINS1Q8NG48 757 aa12.85□□□□□ -0.35
HDAC9-210ENST00000428307 SLKQ9H2G2 1235 aaPredicted RBP12.85□□□□□ -0.35
HDAC9-210ENST00000428307 RBM25P49756 843 aaKnown RBP12.84□□□□□ -0.35
HDAC9-210ENST00000428307 POLA2Q14181 598 aa12.84□□□□□ -0.35
HDAC9-210ENST00000428307 ADAMTS7Q9UKP4 1686 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 GRM8O00222 908 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 IGKV5-2P06315 115 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 MX1P20591 662 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 ANKRD13DQ6ZTN6 518 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
HDAC9-210ENST00000428307 NUTM1Q86Y26 1132 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 OSBPL3Q9H4L5 887 aa12.83□□□□□ -0.36
HDAC9-210ENST00000428307 PLEKHG2Q9H7P9 1386 aa12.82□□□□□ -0.36
HDAC9-210ENST00000428307 ERVV-2B6SEH9 535 aa12.82□□□□□ -0.36
HDAC9-210ENST00000428307 NEXNQ0ZGT2 675 aa12.82□□□□□ -0.36
HDAC9-210ENST00000428307 RHPN1Q8TCX5 695 aa12.82□□□□□ -0.36
HDAC9-210ENST00000428307 MYD88Q99836 296 aa12.82□□□□□ -0.36
HDAC9-210ENST00000428307 OS9Q13438 667 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-210ENST00000428307 LRP10Q7Z4F1 713 aa12.81□□□□□ -0.36
HDAC9-210ENST00000428307 JARID2Q92833 1246 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-210ENST00000428307 SIPA1L3O60292 1781 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-210ENST00000428307 SALL3Q9BXA9 1300 aa12.81□□□□□ -0.36
HDAC9-210ENST00000428307 RAB11FIP3O75154 756 aa12.81□□□□□ -0.36
HDAC9-210ENST00000428307 NKX1-1Q15270 411 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-210ENST00000428307 CASC1Q6TDU7 716 aa12.81□□□□□ -0.36
HDAC9-210ENST00000428307 SUCLG2Q96I99 432 aa12.81□□□□□ -0.36
HDAC9-210ENST00000428307 PA2G4Q9UQ80 394 aaKnown RBP12.81□□□□□ -0.36
HDAC9-210ENST00000428307 SCN11AQ9UI33 1791 aa12.81□□□□□ -0.36
HDAC9-210ENST00000428307 POTEDQ86YR6 584 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 RILPL2Q969X0 211 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 KAZALD1Q96I82 304 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 KIF2CQ99661 725 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 METTL22Q9BUU2 404 aaPredicted RBP12.8□□□□□ -0.36
HDAC9-210ENST00000428307 BICC1Q9H694 974 aaKnown RBP12.8□□□□□ -0.36
HDAC9-210ENST00000428307 NEURL1BA8MQ27 555 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 TRIM6-TRIM34B2RNG4 842 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 ATP5J2-PTCD1G3V325 749 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 KIF1BPQ96EK5 621 aa12.8□□□□□ -0.36
HDAC9-210ENST00000428307 MRC1P22897 1456 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 NBPF26B4DH59 902 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 A1BGP04217 495 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 NFKBIBQ15653 356 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 NBPF14Q5TI25 921 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 NBPF10Q6P3W6 841 aaKnown RBP12.79□□□□□ -0.36
HDAC9-210ENST00000428307 NBPF15Q8N660 670 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 RBM42Q9BTD8 480 aaKnown RBP12.79□□□□□ -0.36
HDAC9-210ENST00000428307 ADAMTS2O95450 1211 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 MTX1Q13505 466 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 GCKRQ14397 625 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 HDAC5Q9UQL6 1122 aa12.79□□□□□ -0.36
HDAC9-210ENST00000428307 UNC5CLQ8IV45 518 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 TMOD3Q9NYL9 352 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 STAP2Q9UGK3 403 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 PKD1L3Q7Z443 1732 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 MAP4K4O95819 1239 aaPredicted RBP12.78□□□□□ -0.36
HDAC9-210ENST00000428307 HSP90AB4PQ58FF6 505 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 HSCBQ8IWL3 235 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 USP26Q9BXU7 913 aa12.78□□□□□ -0.36
HDAC9-210ENST00000428307 UTYO14607 1347 aa12.77□□□□□ -0.37
HDAC9-210ENST00000428307 NHSL1Q5SYE7 1610 aa12.77□□□□□ -0.37
HDAC9-210ENST00000428307 PIP4K2BP78356 416 aa12.77□□□□□ -0.37
HDAC9-210ENST00000428307 MYT1Q01538 1121 aa12.77□□□□□ -0.37
HDAC9-210ENST00000428307 EPHA10Q5JZY3 1008 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms