RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RAD50Q92878 1312 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 PNMA6EA0A0J9YXQ4 647 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 SLFN14P0C7P3 912 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 SLC4A10Q6U841 1118 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 LIMCH1Q9UPQ0 1083 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 AOX1Q06278 1338 aa12.8□□□□□ -0.36
USP54-204ENST00000422491 RRS1Q15050 365 aaKnown RBP12.79□□□□□ -0.36
USP54-204ENST00000422491 MCM10Q7L590 875 aa12.79□□□□□ -0.36
USP54-204ENST00000422491 CGNQ9P2M7 1197 aaKnown RBP12.79□□□□□ -0.36
USP54-204ENST00000422491 SMC3Q9UQE7 1217 aa12.79□□□□□ -0.36
USP54-204ENST00000422491 MTMR6Q9Y217 621 aa12.79□□□□□ -0.36
USP54-204ENST00000422491 MORC2Q9Y6X9 1032 aaPredicted RBP12.79□□□□□ -0.36
USP54-204ENST00000422491 TMEM131LA2VDJ0 1609 aa12.79□□□□□ -0.36
USP54-204ENST00000422491 ALKQ9UM73 1620 aa12.79□□□□□ -0.36
USP54-204ENST00000422491 LRMPQ12912 555 aa12.79□□□□□ -0.36
USP54-204ENST00000422491 C16orf45Q96MC5 204 aaPredicted RBP12.79□□□□□ -0.36
USP54-204ENST00000422491 NRKQ7Z2Y5 1582 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 CCDC186Q7Z3E2 898 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 AEBP1Q8IUX7 1158 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 MRVI1Q9Y6F6 885 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 ATP8B2P98198 1209 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 NAA30Q147X3 362 aaPredicted RBP12.78□□□□□ -0.36
USP54-204ENST00000422491 RASEFQ8IZ41 740 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 LARP6Q9BRS8 491 aaKnown RBP12.78□□□□□ -0.36
USP54-204ENST00000422491 CRB1P82279 1406 aa12.78□□□□□ -0.36
USP54-204ENST00000422491 SGSM2O43147 1006 aa12.77□□□□□ -0.36
USP54-204ENST00000422491 LARGE1O95461 756 aa12.77□□□□□ -0.36
USP54-204ENST00000422491 TNNT1P13805 278 aa12.77□□□□□ -0.36
USP54-204ENST00000422491 SLC52A1Q9NWF4 448 aa12.77□□□□□ -0.36
USP54-204ENST00000422491 PAXBP1Q9Y5B6 917 aa12.77□□□□□ -0.36
USP54-204ENST00000422491 LUZP1Q86V48 1076 aa12.77□□□□□ -0.37
USP54-204ENST00000422491 KIF18AQ8NI77 898 aa12.77□□□□□ -0.37
USP54-204ENST00000422491 LSG1Q9H089 658 aaKnown RBP12.77□□□□□ -0.37
USP54-204ENST00000422491 DLC1Q96QB1 1528 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 TYRO3Q06418 890 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 ZSCAN25Q6NSZ9 544 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 NRBP1Q9UHY1 535 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 ARHGEF10O15013 1369 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 GJB2P29033 226 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 MAP3K11Q16584 847 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 PLA2G4DQ86XP0 818 aa12.76□□□□□ -0.37
USP54-204ENST00000422491 CCDC112Q8NEF3 446 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 RTF1Q92541 710 aaKnown RBP12.75□□□□□ -0.37
USP54-204ENST00000422491 HYPKQ9NX55 129 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 CPS1P31327 1500 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 TERF2Q15554 542 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 SULT6B1Q6IMI4 303 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 GNAI3P08754 354 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 ZNF75DP51815 510 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.75□□□□□ -0.37
USP54-204ENST00000422491 TTC6Q86TZ1 520 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 COG3Q96JB2 828 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 NUP62CLQ9H1M0 184 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 CBX8Q9HC52 389 aa12.75□□□□□ -0.37
USP54-204ENST00000422491 LIG1P18858 919 aa12.74□□□□□ -0.37
USP54-204ENST00000422491 ST3GAL1Q11201 340 aa12.74□□□□□ -0.37
USP54-204ENST00000422491 EIF4A2Q14240 407 aaKnown RBP12.74□□□□□ -0.37
USP54-204ENST00000422491 CCDC83Q8IWF9 413 aa12.74□□□□□ -0.37
USP54-204ENST00000422491 PI4K2BQ8TCG2 481 aa12.74□□□□□ -0.37
USP54-204ENST00000422491 FAM53CQ9NYF3 392 aa12.74□□□□□ -0.37
USP54-204ENST00000422491 XRN1Q8IZH2 1706 aaKnown RBP12.74□□□□□ -0.37
USP54-204ENST00000422491 CPA1P15085 419 aa12.74□□□□□ -0.37
USP54-204ENST00000422491 ELP1O95163 1332 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 DTNBO60941 627 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 WAPLQ7Z5K2 1190 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 MIS18AQ9NYP9 233 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 SOS1Q07889 1333 aaPredicted RBP12.73□□□□□ -0.37
USP54-204ENST00000422491 MON2Q7Z3U7 1717 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 CASTP20810 708 aaKnown RBP12.73□□□□□ -0.37
USP54-204ENST00000422491 CAMK4Q16566 473 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 ANO6Q4KMQ2 910 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 RBM43Q6ZSC3 357 aaKnown RBP12.73□□□□□ -0.37
USP54-204ENST00000422491 KRT222Q8N1A0 295 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 TDRD7Q8NHU6 1098 aaKnown RBP12.73□□□□□ -0.37
USP54-204ENST00000422491 CACTINQ8WUQ7 758 aaKnown RBP12.73□□□□□ -0.37
USP54-204ENST00000422491 IL1RAPL2Q9NP60 686 aa12.73□□□□□ -0.37
USP54-204ENST00000422491 ZBTB22O15209 634 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 MAP4K4O95819 1239 aaPredicted RBP12.72□□□□□ -0.37
USP54-204ENST00000422491 KMT5BQ4FZB7 885 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 DRC7Q8IY82 874 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 LRRFIP2Q9Y608 721 aaKnown RBP12.72□□□□□ -0.37
USP54-204ENST00000422491 CRYBG1Q9Y4K1 1723 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 CCDC171Q6TFL3 1326 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 VPS37CA5D8V6 355 aaPredicted RBP12.72□□□□□ -0.37
USP54-204ENST00000422491 VPS53Q5VIR6 699 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 OSCARQ8IYS5 282 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 ZNF397Q8NF99 534 aaPredicted RBP12.72□□□□□ -0.37
USP54-204ENST00000422491 TRIM5Q9C035 493 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 C3P01024 1663 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 TTC21AQ8NDW8 1320 aa12.72□□□□□ -0.37
USP54-204ENST00000422491 KRT85P78386 507 aa12.71□□□□□ -0.37
USP54-204ENST00000422491 TPD52L1Q16890 204 aaPredicted RBP12.71□□□□□ -0.37
USP54-204ENST00000422491 CCDC144BQ3MJ40 725 aa12.71□□□□□ -0.37
USP54-204ENST00000422491 CEP135Q66GS9 1140 aa12.71□□□□□ -0.37
USP54-204ENST00000422491 CCDC144CPQ8IYA2 1237 aa12.71□□□□□ -0.37
USP54-204ENST00000422491 CKAP2LQ8IYA6 745 aa12.71□□□□□ -0.37
USP54-204ENST00000422491 SH2B1Q9NRF2 756 aaPredicted RBP12.71□□□□□ -0.37
USP54-204ENST00000422491 N4BP2Q86UW6 1770 aaPredicted RBP12.71□□□□□ -0.37
USP54-204ENST00000422491 ZSCAN31Q96LW9 406 aaPredicted RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms