RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 USPL1Q5W0Q7 1092 aa15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 RSPH6AQ9H0K4 717 aa15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 GPBP1L1Q9HC44 474 aaPredicted RBP15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 CEMIPQ8WUJ3 1361 aa15.48■□□□□ 0.07
SQSTM1-203ENST00000422245 POLRMTO00411 1230 aaKnown RBP15.47■□□□□ 0.07
SQSTM1-203ENST00000422245 STARD3NLO95772 234 aa15.47■□□□□ 0.07
SQSTM1-203ENST00000422245 PPP2R1AP30153 589 aa15.47■□□□□ 0.07
SQSTM1-203ENST00000422245 ZNF790Q6PG37 636 aa15.47■□□□□ 0.07
SQSTM1-203ENST00000422245 IL17REQ8NFR9 667 aa15.47■□□□□ 0.07
SQSTM1-203ENST00000422245 NARFQ9UHQ1 456 aa15.47■□□□□ 0.07
SQSTM1-203ENST00000422245 ZNF496Q96IT1 587 aaPredicted RBP15.46■□□□□ 0.07
SQSTM1-203ENST00000422245 HEG1Q9ULI3 1381 aa15.46■□□□□ 0.07
SQSTM1-203ENST00000422245 FCHSD2O94868 740 aa15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 U2AF1L5P0DN76 240 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 TM4SF1P30408 202 aa15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 U2AF1Q01081 240 aaKnown RBP eCLIP15.45■□□□□ 0.063e-6■□□□□ 8.7
SQSTM1-203ENST00000422245 PHACTR3Q96KR7 559 aa15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 TEX13AQ9BXU3 409 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 PIM2Q9P1W9 311 aa15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 NRXN2Q9P2S2 1712 aa15.45■□□□□ 0.06
SQSTM1-203ENST00000422245 A0A087WZG4 1122 aa15.44■□□□□ 0.06
SQSTM1-203ENST00000422245 CANXP27824 592 aaKnown RBP15.44■□□□□ 0.06
SQSTM1-203ENST00000422245 FMNL2Q96PY5 1086 aa15.44■□□□□ 0.06
SQSTM1-203ENST00000422245 AFDNP55196 1824 aaKnown RBP15.44■□□□□ 0.06
SQSTM1-203ENST00000422245 KCNA3P22001 575 aa15.43■□□□□ 0.06
SQSTM1-203ENST00000422245 EIF5P55010 431 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-203ENST00000422245 NFIXQ14938 502 aa15.43■□□□□ 0.06
SQSTM1-203ENST00000422245 DALRD3Q5D0E6 543 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-203ENST00000422245 ZNF526Q8TF50 670 aaPredicted RBP15.43■□□□□ 0.06
SQSTM1-203ENST00000422245 SCN7AQ01118 1682 aa15.43■□□□□ 0.06
SQSTM1-203ENST00000422245 ARHGAP27Q6ZUM4 889 aa15.42■□□□□ 0.06
SQSTM1-203ENST00000422245 RTF1Q92541 710 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-203ENST00000422245 BCL2L12Q9HB09 334 aa15.42■□□□□ 0.06
SQSTM1-203ENST00000422245 DLEC1Q9Y238 1755 aa15.41■□□□□ 0.06
SQSTM1-203ENST00000422245 BTBD11A6QL63 1104 aa15.41■□□□□ 0.06
SQSTM1-203ENST00000422245 CHRNA5P30532 468 aa15.4■□□□□ 0.06
SQSTM1-203ENST00000422245 IL6STP40189 918 aaPredicted RBP15.4■□□□□ 0.06
SQSTM1-203ENST00000422245 HTATSF1O43719 755 aaKnown RBP15.39■□□□□ 0.05
SQSTM1-203ENST00000422245 SERPINB2P05120 415 aa15.39■□□□□ 0.05
SQSTM1-203ENST00000422245 NPM2Q86SE8 214 aaKnown RBP15.39■□□□□ 0.05
SQSTM1-203ENST00000422245 ZNF330Q9Y3S2 320 aaPredicted RBP15.38■□□□□ 0.05
SQSTM1-203ENST00000422245 CARMIL3Q8ND23 1372 aa15.37■□□□□ 0.05
SQSTM1-203ENST00000422245 BCORQ6W2J9 1755 aa15.37■□□□□ 0.05
SQSTM1-203ENST00000422245 KCNQ3O43525 872 aa15.37■□□□□ 0.05
SQSTM1-203ENST00000422245 NEFMP07197 916 aa15.37■□□□□ 0.05
SQSTM1-203ENST00000422245 C9orf131Q5VYM1 1079 aa15.37■□□□□ 0.05
SQSTM1-203ENST00000422245 MCM10Q7L590 875 aa15.37■□□□□ 0.05
SQSTM1-203ENST00000422245 KIF3CO14782 793 aa15.36■□□□□ 0.05
SQSTM1-203ENST00000422245 BICDL1Q6ZP65 573 aa15.36■□□□□ 0.05
SQSTM1-203ENST00000422245 A1BGP04217 495 aa15.35■□□□□ 0.05
SQSTM1-203ENST00000422245 SNRPA1P09661 255 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-203ENST00000422245 TBC1D9BQ66K14 1250 aa15.35■□□□□ 0.05
SQSTM1-203ENST00000422245 TBC1D2BQ9UPU7 963 aa15.35■□□□□ 0.05
SQSTM1-203ENST00000422245 SBF1O95248 1867 aa15.35■□□□□ 0.05
SQSTM1-203ENST00000422245 CAMTA2O94983 1202 aa15.34■□□□□ 0.05
SQSTM1-203ENST00000422245 C2CD5Q86YS7 1000 aa15.34■□□□□ 0.05
SQSTM1-203ENST00000422245 TTLL6Q8N841 843 aa15.34■□□□□ 0.05
SQSTM1-203ENST00000422245 RNF181Q9P0P0 153 aa15.34■□□□□ 0.05
SQSTM1-203ENST00000422245 PDZRN3Q9UPQ7 1066 aa15.34■□□□□ 0.05
SQSTM1-203ENST00000422245 ANKRD31Q8N7Z5 1873 aa15.33■□□□□ 0.05
SQSTM1-203ENST00000422245 H0YIN7 160 aa15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 HSPA6P17066 643 aa15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 DCTN1Q14203 1278 aa15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 DZIP3Q86Y13 1208 aaKnown RBP15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 BRIP1Q9BX63 1249 aa15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 ZC3H4Q9UPT8 1303 aaKnown RBP15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 LAMB4A4D0S4 1761 aa15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 DLG5Q8TDM6 1919 aa15.33■□□□□ 0.04
SQSTM1-203ENST00000422245 PDE6BP35913 854 aa15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 TAF7Q15545 349 aaPredicted RBP15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 PRR5LQ6MZQ0 368 aa15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 CNBD1Q8NA66 436 aa15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 SETDB2Q96T68 719 aa15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 USP16Q9Y5T5 823 aa15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 TNRC6CQ9HCJ0 1690 aaKnown RBP15.32■□□□□ 0.04
SQSTM1-203ENST00000422245 PRAMEF22A3QJZ6 481 aa15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 RGL2O15211 777 aa15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 PNISRQ8TF01 805 aaKnown RBP15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 PNNQ9H307 717 aaKnown RBP15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 ZNF652Q9Y2D9 606 aa15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 KDM2BQ8NHM5 1336 aa15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 MAPK8IP3Q9UPT6 1336 aa15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 COL11A2P13942 1736 aaPredicted RBP15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 KDM3BQ7LBC6 1761 aa15.31■□□□□ 0.04
SQSTM1-203ENST00000422245 NPHP1O15259 732 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 TOMM70O94826 608 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 ST5P78524 1137 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 NFE2L2Q16236 605 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 CLEC4GQ6UXB4 293 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 PLEKHF1Q96S99 279 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 NMRK2Q9NPI5 230 aa15.3■□□□□ 0.04
SQSTM1-203ENST00000422245 LMNB1P20700 586 aa15.29■□□□□ 0.04
SQSTM1-203ENST00000422245 PIP4K2AP48426 406 aaPredicted RBP15.29■□□□□ 0.04
SQSTM1-203ENST00000422245 RASSF7Q02833 373 aa15.29■□□□□ 0.04
SQSTM1-203ENST00000422245 RALBP1Q15311 655 aa15.29■□□□□ 0.04
SQSTM1-203ENST00000422245 ZNF622Q969S3 477 aaKnown RBP eCLIP15.28■□□□□ 0.04
SQSTM1-203ENST00000422245 ARFGEF2Q9Y6D5 1785 aa15.28■□□□□ 0.04
SQSTM1-203ENST00000422245 TIAM2Q8IVF5 1701 aa15.28■□□□□ 0.04
SQSTM1-203ENST00000422245 NBPF26B4DH59 902 aa15.27■□□□□ 0.04
SQSTM1-203ENST00000422245 NBPF10Q6P3W6 841 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms