RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 PHAXQ9H814 394 aaKnown RBP11.82□□□□□ -0.52
CMSS1-201ENST00000421999 RNF20Q5VTR2 975 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 FOXD4L5Q5VV16 416 aaPredicted RBP11.81□□□□□ -0.52
CMSS1-201ENST00000421999 FOXD4L4Q8WXT5 416 aaPredicted RBP11.81□□□□□ -0.52
CMSS1-201ENST00000421999 ARHGAP45Q92619 1136 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 MEIS3Q99687 375 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 LRRCC1Q9C099 1032 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 KIAA1210Q9ULL0 1709 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 ATP6V1AP38606 617 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 RBM5P52756 815 aaKnown RBP eCLIP11.81□□□□□ -0.52
CMSS1-201ENST00000421999 G2E3Q7L622 706 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 RALYLQ86SE5 291 aaKnown RBP11.81□□□□□ -0.52
CMSS1-201ENST00000421999 ERC1Q8IUD2 1116 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 FAM184AQ8NB25 1140 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 CPLX1O14810 134 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 KCNQ3O43525 872 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 CHD1LQ86WJ1 897 aa11.81□□□□□ -0.52
CMSS1-201ENST00000421999 PRIM1P49642 420 aaKnown RBP11.8□□□□□ -0.52
CMSS1-201ENST00000421999 TTC39AQ5SRH9 613 aa11.8□□□□□ -0.52
CMSS1-201ENST00000421999 SLC52A2Q9HAB3 445 aa11.8□□□□□ -0.52
CMSS1-201ENST00000421999 NEURL4Q96JN8 1562 aa11.8□□□□□ -0.52
CMSS1-201ENST00000421999 TRIM44Q96DX7 344 aaPredicted RBP11.8□□□□□ -0.52
CMSS1-201ENST00000421999 PHKG2P15735 406 aa11.8□□□□□ -0.52
CMSS1-201ENST00000421999 NFXL1Q6ZNB6 911 aa11.8□□□□□ -0.52
CMSS1-201ENST00000421999 IQGAP1P46940 1657 aa11.8□□□□□ -0.52
CMSS1-201ENST00000421999 UBE3BQ7Z3V4 1068 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 CWC22Q9HCG8 908 aaKnown RBP11.79□□□□□ -0.52
CMSS1-201ENST00000421999 PCDHB15Q9Y5E8 787 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 SIGLEC1Q9BZZ2 1709 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 FKBP4Q02790 459 aaKnown RBP eCLIP11.79□□□□□ -0.52
CMSS1-201ENST00000421999 ZNF496Q96IT1 587 aaPredicted RBP11.79□□□□□ -0.52
CMSS1-201ENST00000421999 ERICH2A1L162 156 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 HSP90AB3PQ58FF7 597 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 WDR17Q8IZU2 1322 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 SMARCA5O60264 1052 aaPredicted RBP11.79□□□□□ -0.52
CMSS1-201ENST00000421999 IGHDP01880 384 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 CNTROBQ8N137 903 aa11.79□□□□□ -0.52
CMSS1-201ENST00000421999 CDCA7Q9BWT1 371 aaPredicted RBP11.79□□□□□ -0.52
CMSS1-201ENST00000421999 CDK12Q9NYV4 1490 aaPredicted RBP11.79□□□□□ -0.52
CMSS1-201ENST00000421999 SF3A1Q15459 793 aaKnown RBP11.78□□□□□ -0.52
CMSS1-201ENST00000421999 WWC3Q9ULE0 1092 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 RTL1A6NKG5 1358 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 H3BQV1 296 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 FOXD4L6Q3SYB3 417 aaPredicted RBP11.78□□□□□ -0.52
CMSS1-201ENST00000421999 METTL24Q5JXM2 366 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 IFFO2Q5TF58 517 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 INTS3Q68E01 1043 aaKnown RBP11.78□□□□□ -0.52
CMSS1-201ENST00000421999 FOXD4L3Q6VB84 417 aaPredicted RBP11.78□□□□□ -0.52
CMSS1-201ENST00000421999 SMARCC1Q92922 1105 aaPredicted RBP11.78□□□□□ -0.52
CMSS1-201ENST00000421999 CARD10Q9BWT7 1032 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 CHAF1AQ13111 956 aaPredicted RBP11.78□□□□□ -0.52
CMSS1-201ENST00000421999 ABCF2Q9UG63 623 aa11.78□□□□□ -0.52
CMSS1-201ENST00000421999 KSR2Q6VAB6 950 aa11.77□□□□□ -0.52
CMSS1-201ENST00000421999 ARHGAP23Q9P227 1491 aa11.77□□□□□ -0.52
CMSS1-201ENST00000421999 SLIT1O75093 1534 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 IKQ13123 557 aaPredicted RBP11.77□□□□□ -0.53
CMSS1-201ENST00000421999 TFCP2L1Q9NZI6 479 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 DIP2AQ14689 1571 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 CPS1P31327 1500 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 SLC4A3P48751 1232 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 EIF4A1P60842 406 aaKnown RBP11.77□□□□□ -0.53
CMSS1-201ENST00000421999 MCTP1Q6DN14 999 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 AACSQ86V21 672 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 RPGRQ92834 1020 aaKnown RBP11.77□□□□□ -0.53
CMSS1-201ENST00000421999 KIF24Q5T7B8 1368 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 ANKIB1Q9P2G1 1089 aa11.77□□□□□ -0.53
CMSS1-201ENST00000421999 CDC42BPGQ6DT37 1551 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 USP31Q70CQ4 1352 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 CWF19L2Q2TBE0 894 aaKnown RBP11.76□□□□□ -0.53
CMSS1-201ENST00000421999 GBP4Q96PP9 640 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 DDX21Q9NR30 783 aaKnown RBP eCLIP11.76□□□□□ -0.53
CMSS1-201ENST00000421999 MAP4K4O95819 1239 aaPredicted RBP11.76□□□□□ -0.53
CMSS1-201ENST00000421999 A1BGP04217 495 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 IFIT5Q13325 482 aaKnown RBP11.76□□□□□ -0.53
CMSS1-201ENST00000421999 RRP12Q5JTH9 1297 aaKnown RBP11.76□□□□□ -0.53
CMSS1-201ENST00000421999 NUTM1Q86Y26 1132 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 BABAM1Q9NWV8 329 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 ZNF521Q96K83 1311 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 TNS3Q68CZ2 1445 aa11.76□□□□□ -0.53
CMSS1-201ENST00000421999 PPP1R42Q7Z4L9 355 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 ZSCAN29Q8IWY8 852 aaPredicted RBP11.75□□□□□ -0.53
CMSS1-201ENST00000421999 STK11IPQ8N1F8 1099 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 ZNF622Q969S3 477 aaKnown RBP eCLIP11.75□□□□□ -0.534e-6■■□□□ 14.2
CMSS1-201ENST00000421999 CCDC34Q96HJ3 373 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 MYO5BQ9ULV0 1848 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 CDC45O75419 566 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 CWC25Q9NXE8 425 aaPredicted RBP11.75□□□□□ -0.53
CMSS1-201ENST00000421999 C6orf229H3BNL8 230 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 ATP2B2Q01814 1243 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 NBPF5PQ86XG9 351 aaPredicted RBP11.75□□□□□ -0.53
CMSS1-201ENST00000421999 RAI14Q9P0K7 980 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 C3P01024 1663 aa11.75□□□□□ -0.53
CMSS1-201ENST00000421999 IPO9Q96P70 1041 aaKnown RBP11.74□□□□□ -0.53
CMSS1-201ENST00000421999 LRP2BPQ9P2M1 347 aa11.74□□□□□ -0.53
CMSS1-201ENST00000421999 IDH1O75874 414 aaKnown RBP11.74□□□□□ -0.53
CMSS1-201ENST00000421999 DNAJC10Q8IXB1 793 aa11.74□□□□□ -0.53
CMSS1-201ENST00000421999 CHMP4CQ96CF2 233 aa11.74□□□□□ -0.53
CMSS1-201ENST00000421999 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.74□□□□□ -0.53
CMSS1-201ENST00000421999 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.74□□□□□ -0.53
CMSS1-201ENST00000421999 FAM182BQ5T319 152 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms