RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DBF4Q9UBU7 674 aaPredicted RBP21.79■■□□□ 1.08
CCDC28B-202ENST00000421922 NHSQ6T4R5 1651 aa21.78■■□□□ 1.08
CCDC28B-202ENST00000421922 BRWD3Q6RI45 1802 aa21.78■■□□□ 1.08
CCDC28B-202ENST00000421922 RBM42Q9BTD8 480 aaKnown RBP21.78■■□□□ 1.08
CCDC28B-202ENST00000421922 CHPF2Q9P2E5 772 aa21.78■■□□□ 1.08
CCDC28B-202ENST00000421922 ASAP1Q9ULH1 1129 aa21.78■■□□□ 1.08
CCDC28B-202ENST00000421922 ATG3Q9NT62 314 aa21.77■■□□□ 1.08
CCDC28B-202ENST00000421922 PRAMEF22A3QJZ6 481 aa21.76■■□□□ 1.07
CCDC28B-202ENST00000421922 SMARCC1Q92922 1105 aaPredicted RBP21.76■■□□□ 1.07
CCDC28B-202ENST00000421922 PPP4R2Q9NY27 417 aa21.76■■□□□ 1.07
CCDC28B-202ENST00000421922 COG6Q9Y2V7 657 aa21.76■■□□□ 1.07
CCDC28B-202ENST00000421922 EP400Q96L91 3159 aa21.75■■□□□ 1.07
CCDC28B-202ENST00000421922 FLIIQ13045 1269 aa21.75■■□□□ 1.07
CCDC28B-202ENST00000421922 FKBP5Q13451 457 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-202ENST00000421922 ITPRIPQ8IWB1 547 aa21.75■■□□□ 1.07
CCDC28B-202ENST00000421922 VSIG10Q8N0Z9 540 aa21.75■■□□□ 1.07
CCDC28B-202ENST00000421922 TEX13AQ9BXU3 409 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-202ENST00000421922 KRT27Q7Z3Y8 459 aa21.74■■□□□ 1.07
CCDC28B-202ENST00000421922 HYPKQ9NX55 129 aa21.74■■□□□ 1.07
CCDC28B-202ENST00000421922 TNNQ9UQP3 1299 aa21.74■■□□□ 1.07
CCDC28B-202ENST00000421922 SBF2Q86WG5 1849 aa21.73■■□□□ 1.07
CCDC28B-202ENST00000421922 MVPQ14764 893 aaKnown RBP21.73■■□□□ 1.07
CCDC28B-202ENST00000421922 DDX21Q9NR30 783 aaKnown RBP eCLIP21.73■■□□□ 1.07
CCDC28B-202ENST00000421922 ERBB4Q15303 1308 aa21.73■■□□□ 1.07
CCDC28B-202ENST00000421922 RLBP1P12271 317 aa21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 CHMP4BQ9H444 224 aaKnown RBP21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 BTAF1O14981 1849 aa21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 FAM182BQ5T319 152 aa21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 G2E3Q7L622 706 aa21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 DDX19BQ9UMR2 479 aa21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 USP16Q9Y5T5 823 aa21.72■■□□□ 1.07
CCDC28B-202ENST00000421922 ABCC4O15439 1325 aa21.71■■□□□ 1.07
CCDC28B-202ENST00000421922 PALLDQ8WX93 1383 aa21.71■■□□□ 1.07
CCDC28B-202ENST00000421922 KCNQ2O43526 872 aa21.71■■□□□ 1.07
CCDC28B-202ENST00000421922 STARD3NLO95772 234 aa21.71■■□□□ 1.07
CCDC28B-202ENST00000421922 TMEM57Q8N5G2 664 aa21.71■■□□□ 1.07
CCDC28B-202ENST00000421922 DDX58O95786 925 aaKnown RBP21.7■■□□□ 1.06
CCDC28B-202ENST00000421922 ANXA1P04083 346 aa21.7■■□□□ 1.06
CCDC28B-202ENST00000421922 FAM196AQ6ZSG2 479 aa21.7■■□□□ 1.06
CCDC28B-202ENST00000421922 MYL6BP14649 208 aa21.69■■□□□ 1.06
CCDC28B-202ENST00000421922 AAMPQ13685 434 aa21.69■■□□□ 1.06
CCDC28B-202ENST00000421922 CCDC136Q96JN2 1154 aa21.69■■□□□ 1.06
CCDC28B-202ENST00000421922 PHAXQ9H814 394 aaKnown RBP21.69■■□□□ 1.06
CCDC28B-202ENST00000421922 TJP1Q07157 1748 aa21.68■■□□□ 1.06
CCDC28B-202ENST00000421922 SLC4A10Q6U841 1118 aa21.68■■□□□ 1.06
CCDC28B-202ENST00000421922 DNAJC10Q8IXB1 793 aa21.68■■□□□ 1.06
CCDC28B-202ENST00000421922 PXDNLA1KZ92 1463 aa21.67■■□□□ 1.06
CCDC28B-202ENST00000421922 N4BP2Q86UW6 1770 aaPredicted RBP21.67■■□□□ 1.06
CCDC28B-202ENST00000421922 CCT4P50991 539 aaKnown RBP21.66■■□□□ 1.06
CCDC28B-202ENST00000421922 PROSER3Q2NL68 480 aa21.66■■□□□ 1.06
CCDC28B-202ENST00000421922 CCDC125Q86Z20 511 aa21.66■■□□□ 1.06
CCDC28B-202ENST00000421922 LOC102724428A0A0B4J2F2 783 aa21.65■■□□□ 1.06
CCDC28B-202ENST00000421922 ATP6V1AP38606 617 aa21.65■■□□□ 1.06
CCDC28B-202ENST00000421922 SIK1P57059 783 aa21.65■■□□□ 1.06
CCDC28B-202ENST00000421922 AIMP1Q12904 312 aaKnown RBP21.65■■□□□ 1.06
CCDC28B-202ENST00000421922 CICQ96RK0 1608 aaPredicted RBP21.65■■□□□ 1.06
CCDC28B-202ENST00000421922 F6X3S4 739 aa21.64■■□□□ 1.06
CCDC28B-202ENST00000421922 NPM2Q86SE8 214 aaKnown RBP21.64■■□□□ 1.06
CCDC28B-202ENST00000421922 ZNF831Q5JPB2 1677 aa21.64■■□□□ 1.05
CCDC28B-202ENST00000421922 A1BGP04217 495 aa21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 PDIA6Q15084 440 aa21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 INTS3Q68E01 1043 aaKnown RBP21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 BCL11BQ9C0K0 894 aaPredicted RBP21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 PIP4K2AP48426 406 aaPredicted RBP21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 XAGE3Q8WTP9 111 aa21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 DNAAF4Q8WXU2 420 aa21.63■■□□□ 1.05
CCDC28B-202ENST00000421922 B4GALNT3Q6L9W6 998 aa21.62■■□□□ 1.05
CCDC28B-202ENST00000421922 RIC3Q7Z5B4 369 aa21.62■■□□□ 1.05
CCDC28B-202ENST00000421922 ZNF330Q9Y3S2 320 aaPredicted RBP21.62■■□□□ 1.05
CCDC28B-202ENST00000421922 PI4KAP2A4QPH2 592 aa21.61■■□□□ 1.05
CCDC28B-202ENST00000421922 KSR2Q6VAB6 950 aa21.61■■□□□ 1.05
CCDC28B-202ENST00000421922 COPS6Q7L5N1 327 aa21.61■■□□□ 1.05
CCDC28B-202ENST00000421922 PI4KAP1Q8N8J0 262 aa21.61■■□□□ 1.05
CCDC28B-202ENST00000421922 CYP19A1P11511 503 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-202ENST00000421922 SLC4A9Q96Q91 983 aa21.6■■□□□ 1.05
CCDC28B-202ENST00000421922 MAP3K2Q9Y2U5 619 aa21.6■■□□□ 1.05
CCDC28B-202ENST00000421922 LY75O60449 1722 aa21.59■■□□□ 1.05
CCDC28B-202ENST00000421922 NEXNQ0ZGT2 675 aa21.59■■□□□ 1.05
CCDC28B-202ENST00000421922 ADCY9O60503 1353 aa21.59■■□□□ 1.05
CCDC28B-202ENST00000421922 COL5A3P25940 1745 aaPredicted RBP21.59■■□□□ 1.05
CCDC28B-202ENST00000421922 ARFGEF2Q9Y6D5 1785 aa21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 NBPF26B4DH59 902 aa21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 NBPF14Q5TI25 921 aa21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 NBPF10Q6P3W6 841 aaKnown RBP21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 KIF6Q6ZMV9 814 aa21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 NBPF15Q8N660 670 aa21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 SRCIN1Q9C0H9 1055 aa21.58■■□□□ 1.05
CCDC28B-202ENST00000421922 ATP10DQ9P241 1426 aa21.57■■□□□ 1.04
CCDC28B-202ENST00000421922 TRIM37O94972 964 aa21.57■■□□□ 1.04
CCDC28B-202ENST00000421922 ANKRD13DQ6ZTN6 518 aa21.57■■□□□ 1.04
CCDC28B-202ENST00000421922 PTF1AQ7RTS3 328 aa21.57■■□□□ 1.04
CCDC28B-202ENST00000421922 CCDC87Q9NVE4 849 aa21.57■■□□□ 1.04
CCDC28B-202ENST00000421922 CCNL1Q9UK58 526 aaPredicted RBP21.57■■□□□ 1.04
CCDC28B-202ENST00000421922 ARXQ96QS3 562 aa21.56■■□□□ 1.04
CCDC28B-202ENST00000421922 PLBD2Q8NHP8 589 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 ZBTB1Q9Y2K1 713 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 AFDNP55196 1824 aaKnown RBP21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 RREB1Q92766 1687 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 NUP188Q5SRE5 1749 aa21.55■■□□□ 1.04
CCDC28B-202ENST00000421922 ZBTB7BO15156 539 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms