RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 UBR2Q8IWV8 1755 aa28.46■■■□□ 2.15
PTPN4-202ENST00000420482 NEFMP07197 916 aa28.45■■■□□ 2.14
PTPN4-202ENST00000420482 FKBP8Q14318 412 aa28.45■■■□□ 2.14
PTPN4-202ENST00000420482 RTF1Q92541 710 aaKnown RBP28.45■■■□□ 2.14
PTPN4-202ENST00000420482 COL15A1P39059 1388 aa28.45■■■□□ 2.14
PTPN4-202ENST00000420482 PHACTR3Q96KR7 559 aa28.44■■■□□ 2.14
PTPN4-202ENST00000420482 ARFGEF1Q9Y6D6 1849 aa28.43■■■□□ 2.14
PTPN4-202ENST00000420482 CEP350Q5VT06 3117 aa28.43■■■□□ 2.14
PTPN4-202ENST00000420482 USPL1Q5W0Q7 1092 aa28.43■■■□□ 2.14
PTPN4-202ENST00000420482 NARFQ9UHQ1 456 aa28.43■■■□□ 2.14
PTPN4-202ENST00000420482 ZBTB1Q9Y2K1 713 aa28.43■■■□□ 2.14
PTPN4-202ENST00000420482 CEMIPQ8WUJ3 1361 aa28.42■■■□□ 2.14
PTPN4-202ENST00000420482 NPM2Q86SE8 214 aaKnown RBP28.42■■■□□ 2.14
PTPN4-202ENST00000420482 FMNL2Q96PY5 1086 aa28.42■■■□□ 2.14
PTPN4-202ENST00000420482 HEG1Q9ULI3 1381 aa28.41■■■□□ 2.14
PTPN4-202ENST00000420482 A0A087WZG4 1122 aa28.41■■■□□ 2.14
PTPN4-202ENST00000420482 A0A0G2JLW4 131 aa28.41■■■□□ 2.14
PTPN4-202ENST00000420482 BCS1LQ9Y276 419 aa28.41■■■□□ 2.14
PTPN4-202ENST00000420482 BTBD11A6QL63 1104 aa28.4■■■□□ 2.14
PTPN4-202ENST00000420482 CANXP27824 592 aaKnown RBP28.4■■■□□ 2.14
PTPN4-202ENST00000420482 ZNF496Q96IT1 587 aaPredicted RBP28.4■■■□□ 2.14
PTPN4-202ENST00000420482 SIPA1L3O60292 1781 aaPredicted RBP28.39■■■□□ 2.14
PTPN4-202ENST00000420482 DPEP1P16444 411 aa28.38■■■□□ 2.13
PTPN4-202ENST00000420482 TM4SF1P30408 202 aa28.38■■■□□ 2.13
PTPN4-202ENST00000420482 ZNF526Q8TF50 670 aaPredicted RBP28.38■■■□□ 2.13
PTPN4-202ENST00000420482 HTATSF1O43719 755 aaKnown RBP28.37■■■□□ 2.13
PTPN4-202ENST00000420482 DDR1Q08345 913 aa28.37■■■□□ 2.13
PTPN4-202ENST00000420482 POLRMTO00411 1230 aaKnown RBP28.36■■■□□ 2.13
PTPN4-202ENST00000420482 PIM2Q9P1W9 311 aa28.36■■■□□ 2.13
PTPN4-202ENST00000420482 PNNQ9H307 717 aaKnown RBP28.35■■■□□ 2.13
PTPN4-202ENST00000420482 EIF5P55010 431 aaKnown RBP28.34■■■□□ 2.13
PTPN4-202ENST00000420482 IL6STP40189 918 aaPredicted RBP28.32■■■□□ 2.12
PTPN4-202ENST00000420482 NFIXQ14938 502 aa28.31■■■□□ 2.12
PTPN4-202ENST00000420482 ARHGAP27Q6ZUM4 889 aa28.31■■■□□ 2.12
PTPN4-202ENST00000420482 MCM10Q7L590 875 aa28.31■■■□□ 2.12
PTPN4-202ENST00000420482 ZNF330Q9Y3S2 320 aaPredicted RBP28.31■■■□□ 2.12
PTPN4-202ENST00000420482 HSPA6P17066 643 aa28.3■■■□□ 2.12
PTPN4-202ENST00000420482 DALRD3Q5D0E6 543 aaKnown RBP28.3■■■□□ 2.12
PTPN4-202ENST00000420482 KIF3CO14782 793 aa28.29■■■□□ 2.12
PTPN4-202ENST00000420482 KCNA3P22001 575 aa28.29■■■□□ 2.12
PTPN4-202ENST00000420482 AFDNP55196 1824 aaKnown RBP28.28■■■□□ 2.12
PTPN4-202ENST00000420482 SERPINB2P05120 415 aa28.28■■■□□ 2.12
PTPN4-202ENST00000420482 SNRPA1P09661 255 aaKnown RBP28.27■■■□□ 2.12
PTPN4-202ENST00000420482 RALBP1Q15311 655 aa28.27■■■□□ 2.12
PTPN4-202ENST00000420482 BCL2L12Q9HB09 334 aa28.26■■■□□ 2.11
PTPN4-202ENST00000420482 MAPK8IP3Q9UPT6 1336 aa28.25■■■□□ 2.11
PTPN4-202ENST00000420482 KCNQ3O43525 872 aa28.25■■■□□ 2.11
PTPN4-202ENST00000420482 TAF7Q15545 349 aaPredicted RBP28.25■■■□□ 2.11
PTPN4-202ENST00000420482 NRXN2Q9P2S2 1712 aa28.25■■■□□ 2.11
PTPN4-202ENST00000420482 SBF1O95248 1867 aa28.25■■■□□ 2.11
PTPN4-202ENST00000420482 A1BGP04217 495 aa28.24■■■□□ 2.11
PTPN4-202ENST00000420482 CHRNA5P30532 468 aa28.24■■■□□ 2.11
PTPN4-202ENST00000420482 DCTN1Q14203 1278 aa28.24■■■□□ 2.11
PTPN4-202ENST00000420482 BICDL1Q6ZP65 573 aa28.24■■■□□ 2.11
PTPN4-202ENST00000420482 PNISRQ8TF01 805 aaKnown RBP28.24■■■□□ 2.11
PTPN4-202ENST00000420482 TBC1D2BQ9UPU7 963 aa28.24■■■□□ 2.11
PTPN4-202ENST00000420482 DLEC1Q9Y238 1755 aa28.23■■■□□ 2.11
PTPN4-202ENST00000420482 SCN7AQ01118 1682 aa28.22■■■□□ 2.11
PTPN4-202ENST00000420482 PDZRN3Q9UPQ7 1066 aa28.21■■■□□ 2.11
PTPN4-202ENST00000420482 USP16Q9Y5T5 823 aa28.21■■■□□ 2.11
PTPN4-202ENST00000420482 CARMIL3Q8ND23 1372 aa28.21■■■□□ 2.11
PTPN4-202ENST00000420482 H0YIN7 160 aa28.2■■■□□ 2.1
PTPN4-202ENST00000420482 NPHP1O15259 732 aa28.2■■■□□ 2.1
PTPN4-202ENST00000420482 DZIP3Q86Y13 1208 aaKnown RBP28.2■■■□□ 2.1
PTPN4-202ENST00000420482 NFE2L2Q16236 605 aa28.19■■■□□ 2.1
PTPN4-202ENST00000420482 TBC1D9BQ66K14 1250 aa28.19■■■□□ 2.1
PTPN4-202ENST00000420482 SETDB2Q96T68 719 aa28.19■■■□□ 2.1
PTPN4-202ENST00000420482 PLEKHF1Q96S99 279 aa28.18■■■□□ 2.1
PTPN4-202ENST00000420482 ZNF652Q9Y2D9 606 aa28.18■■■□□ 2.1
PTPN4-202ENST00000420482 PDE6BP35913 854 aa28.17■■■□□ 2.1
PTPN4-202ENST00000420482 C2CD5Q86YS7 1000 aa28.17■■■□□ 2.1
PTPN4-202ENST00000420482 DDX10Q13206 875 aaKnown RBP28.16■■■□□ 2.1
PTPN4-202ENST00000420482 TTLL6Q8N841 843 aa28.16■■■□□ 2.1
PTPN4-202ENST00000420482 TNRC6CQ9HCJ0 1690 aaKnown RBP28.16■■■□□ 2.1
PTPN4-202ENST00000420482 CAMTA2O94983 1202 aa28.15■■■□□ 2.1
PTPN4-202ENST00000420482 CLEC4GQ6UXB4 293 aa28.15■■■□□ 2.1
PTPN4-202ENST00000420482 DLG5Q8TDM6 1919 aa28.14■■■□□ 2.1
PTPN4-202ENST00000420482 TOMM70O94826 608 aa28.14■■■□□ 2.1
PTPN4-202ENST00000420482 C9orf131Q5VYM1 1079 aa28.14■■■□□ 2.1
PTPN4-202ENST00000420482 BRIP1Q9BX63 1249 aa28.14■■■□□ 2.1
PTPN4-202ENST00000420482 PRAMEF22A3QJZ6 481 aa28.13■■■□□ 2.09
PTPN4-202ENST00000420482 ST5P78524 1137 aa28.13■■■□□ 2.09
PTPN4-202ENST00000420482 CNBD1Q8NA66 436 aa28.13■■■□□ 2.09
PTPN4-202ENST00000420482 RGL2O15211 777 aa28.12■■■□□ 2.09
PTPN4-202ENST00000420482 NMRK2Q9NPI5 230 aa28.12■■■□□ 2.09
PTPN4-202ENST00000420482 MIS18AQ9NYP9 233 aa28.12■■■□□ 2.09
PTPN4-202ENST00000420482 MYBBP1AQ9BQG0 1328 aaKnown RBP28.12■■■□□ 2.09
PTPN4-202ENST00000420482 WDR90Q96KV7 1748 aa28.12■■■□□ 2.09
PTPN4-202ENST00000420482 BCORQ6W2J9 1755 aa28.11■■■□□ 2.09
PTPN4-202ENST00000420482 PIP4K2AP48426 406 aaPredicted RBP28.11■■■□□ 2.09
PTPN4-202ENST00000420482 PRR5LQ6MZQ0 368 aa28.11■■■□□ 2.09
PTPN4-202ENST00000420482 RNF181Q9P0P0 153 aa28.11■■■□□ 2.09
PTPN4-202ENST00000420482 CCDC88AQ3V6T2 1871 aa28.1■■■□□ 2.09
PTPN4-202ENST00000420482 APLP1P51693 650 aa28.09■■■□□ 2.09
PTPN4-202ENST00000420482 LMOD3Q0VAK6 560 aa28.09■■■□□ 2.09
PTPN4-202ENST00000420482 IFFO2Q5TF58 517 aa28.09■■■□□ 2.09
PTPN4-202ENST00000420482 LAMB4A4D0S4 1761 aa28.09■■■□□ 2.09
PTPN4-202ENST00000420482 ZNF622Q969S3 477 aaKnown RBP eCLIP28.08■■■□□ 2.09
PTPN4-202ENST00000420482 ANKRD31Q8N7Z5 1873 aa28.08■■■□□ 2.09
PTPN4-202ENST00000420482 KDM3BQ7LBC6 1761 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms