RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 VSIG10Q8N0Z9 540 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 MAP3K2Q9Y2U5 619 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 COL5A2P05997 1499 aaPredicted RBP10.33□□□□□ -0.76
USP54-203ENST00000418501 BMP2KLQ5H9B9 411 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 RTL5Q5HYW3 569 aaPredicted RBP10.33□□□□□ -0.76
USP54-203ENST00000418501 CEP85Q6P2H3 762 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 ANKRD13DQ6ZTN6 518 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 NGLY1Q96IV0 654 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 F6X3S4 739 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 C1orf115Q9H7X2 142 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 NOP58Q9Y2X3 529 aaKnown RBP10.33□□□□□ -0.76
USP54-203ENST00000418501 JCADQ9P266 1359 aa10.33□□□□□ -0.76
USP54-203ENST00000418501 REC8O95072 547 aa10.32□□□□□ -0.76
USP54-203ENST00000418501 KIF1BPQ96EK5 621 aa10.32□□□□□ -0.76
USP54-203ENST00000418501 ARXQ96QS3 562 aa10.32□□□□□ -0.76
USP54-203ENST00000418501 AHDC1Q5TGY3 1603 aaPredicted RBP10.32□□□□□ -0.76
USP54-203ENST00000418501 MEIS3Q99687 375 aa10.32□□□□□ -0.76
USP54-203ENST00000418501 DLG5Q8TDM6 1919 aa10.32□□□□□ -0.76
USP54-203ENST00000418501 SPATA31A6Q5VVP1 1343 aa10.32□□□□□ -0.76
USP54-203ENST00000418501 CLASRPQ8N2M8 674 aaKnown RBP10.32□□□□□ -0.76
USP54-203ENST00000418501 STRCP1A6NGW2 1772 aa10.31□□□□□ -0.76
USP54-203ENST00000418501 CYP27B1O15528 508 aa10.31□□□□□ -0.76
USP54-203ENST00000418501 G2E3Q7L622 706 aa10.31□□□□□ -0.76
USP54-203ENST00000418501 PLBD2Q8NHP8 589 aa10.31□□□□□ -0.76
USP54-203ENST00000418501 SYTL4Q96C24 671 aaPredicted RBP10.31□□□□□ -0.76
USP54-203ENST00000418501 RBM42Q9BTD8 480 aaKnown RBP10.31□□□□□ -0.76
USP54-203ENST00000418501 ATP10DQ9P241 1426 aa10.31□□□□□ -0.76
USP54-203ENST00000418501 SURF6O75683 361 aaKnown RBP10.31□□□□□ -0.76
USP54-203ENST00000418501 MYL6BP14649 208 aa10.31□□□□□ -0.76
USP54-203ENST00000418501 A0A087WZG4 1122 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 METTL22Q9BUU2 404 aaPredicted RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 LRRFIP2Q9Y608 721 aaKnown RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 HEG1Q9ULI3 1381 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 LRRC37A3O60309 1634 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 GRM8O00222 908 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 SRGAP3O43295 1099 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 IFIT2P09913 472 aaKnown RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 SLC39A6Q13433 755 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 LRRFIP1Q32MZ4 808 aaKnown RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 RUFY2Q8WXA3 655 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 ZNF496Q96IT1 587 aaPredicted RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 MSH5O43196 834 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 XAGE3Q8WTP9 111 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 AOX1Q06278 1338 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 MEGF6O75095 1541 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 NHSL1Q5SYE7 1610 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 PARP4Q9UKK3 1724 aaKnown RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 CAMTA1Q9Y6Y1 1673 aa10.3□□□□□ -0.76
USP54-203ENST00000418501 COL14A1Q05707 1796 aaKnown RBP10.3□□□□□ -0.76
USP54-203ENST00000418501 MARF1Q9Y4F3 1742 aaKnown RBP10.29□□□□□ -0.76
USP54-203ENST00000418501 HIP1O00291 1037 aa10.29□□□□□ -0.76
USP54-203ENST00000418501 COPS6Q7L5N1 327 aa10.29□□□□□ -0.76
USP54-203ENST00000418501 IBTKQ9P2D0 1353 aaPredicted RBP10.29□□□□□ -0.76
USP54-203ENST00000418501 APBB1O00213 710 aa10.29□□□□□ -0.76
USP54-203ENST00000418501 HSCBQ8IWL3 235 aa10.29□□□□□ -0.76
USP54-203ENST00000418501 PHAXQ9H814 394 aaKnown RBP10.29□□□□□ -0.76
USP54-203ENST00000418501 TAF7LQ5H9L4 462 aa10.29□□□□□ -0.76
USP54-203ENST00000418501 CWC25Q9NXE8 425 aaPredicted RBP10.29□□□□□ -0.76
USP54-203ENST00000418501 BEND3Q5T5X7 828 aa10.28□□□□□ -0.76
USP54-203ENST00000418501 BARGINQ6ZT62 677 aa10.28□□□□□ -0.76
USP54-203ENST00000418501 KIAA1211Q6ZU35 1233 aa10.28□□□□□ -0.76
USP54-203ENST00000418501 MYD88Q99836 296 aa10.28□□□□□ -0.76
USP54-203ENST00000418501 ZNF330Q9Y3S2 320 aaPredicted RBP10.28□□□□□ -0.76
USP54-203ENST00000418501 HSP90AA1P07900 732 aaKnown RBP10.28□□□□□ -0.76
USP54-203ENST00000418501 UNC5CLQ8IV45 518 aa10.28□□□□□ -0.76
USP54-203ENST00000418501 ZNF652Q9Y2D9 606 aa10.28□□□□□ -0.76
USP54-203ENST00000418501 PTCD1O75127 700 aaKnown RBP10.28□□□□□ -0.76
USP54-203ENST00000418501 KCNQ3O43525 872 aa10.27□□□□□ -0.76
USP54-203ENST00000418501 MFAP1P55081 439 aaKnown RBP10.27□□□□□ -0.76
USP54-203ENST00000418501 CNTROBQ8N137 903 aa10.27□□□□□ -0.76
USP54-203ENST00000418501 TRIM6-TRIM34B2RNG4 842 aa10.27□□□□□ -0.77
USP54-203ENST00000418501 PPP1R42Q7Z4L9 355 aa10.27□□□□□ -0.77
USP54-203ENST00000418501 CACNA1FO60840 1977 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 CCDC191Q8NCU4 936 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 CHMP3Q9Y3E7 222 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 SSH3Q8TE77 659 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 USP44Q9H0E7 712 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 KDM6AO15550 1401 aaPredicted RBP10.26□□□□□ -0.77
USP54-203ENST00000418501 MX1P20591 662 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 CERKQ8TCT0 537 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 C22orf23Q9BZE7 217 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 TTC22Q5TAA0 569 aa10.26□□□□□ -0.77
USP54-203ENST00000418501 MRC1P22897 1456 aa10.25□□□□□ -0.77
USP54-203ENST00000418501 SPATA31A1Q5TZJ5 1347 aa10.25□□□□□ -0.77
USP54-203ENST00000418501 GLRX3O76003 335 aaKnown RBP10.25□□□□□ -0.77
USP54-203ENST00000418501 C8orf37Q96NL8 207 aa10.25□□□□□ -0.77
USP54-203ENST00000418501 ROBO1Q9Y6N7 1651 aa10.25□□□□□ -0.77
USP54-203ENST00000418501 TTC41PQ6P2S7 1318 aa10.25□□□□□ -0.77
USP54-203ENST00000418501 C8orf34Q49A92 452 aa10.25□□□□□ -0.77
USP54-203ENST00000418501 RGS12O14924 1447 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 MTX1Q13505 466 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 VPS72Q15906 364 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 GCKRQ14397 625 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 SPATA31A5Q5VU36 1347 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 SPATA31A7Q8IWB4 1347 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 EPB41L2O43491 1005 aaKnown RBP10.24□□□□□ -0.77
USP54-203ENST00000418501 RHPN1Q8TCX5 695 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 EXOC6BQ9Y2D4 811 aa10.24□□□□□ -0.77
USP54-203ENST00000418501 LTBP4Q8N2S1 1624 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 TNS2Q63HR2 1409 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms