RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 C2CD5Q86YS7 1000 aa12.9□□□□□ -0.34
LINC01238-201ENST00000416204 CCDC24Q8N4L8 307 aa12.9□□□□□ -0.34
LINC01238-201ENST00000416204 CARMIL3Q8ND23 1372 aa12.9□□□□□ -0.34
LINC01238-201ENST00000416204 ZNF831Q5JPB2 1677 aa12.89□□□□□ -0.35
LINC01238-201ENST00000416204 NFKBIEO00221 500 aa12.89□□□□□ -0.35
LINC01238-201ENST00000416204 SLC39A6Q13433 755 aa12.89□□□□□ -0.35
LINC01238-201ENST00000416204 SOS1Q07889 1333 aaPredicted RBP12.88□□□□□ -0.35
LINC01238-201ENST00000416204 POTECB2RU33 542 aa12.88□□□□□ -0.35
LINC01238-201ENST00000416204 POTEIP0CG38 1075 aa12.88□□□□□ -0.35
LINC01238-201ENST00000416204 POTEJP0CG39 1038 aa12.88□□□□□ -0.35
LINC01238-201ENST00000416204 AMOTQ4VCS5 1084 aa12.88□□□□□ -0.35
LINC01238-201ENST00000416204 SULT6B1Q6IMI4 303 aa12.88□□□□□ -0.35
LINC01238-201ENST00000416204 ADAMTS7Q9UKP4 1686 aa12.87□□□□□ -0.35
LINC01238-201ENST00000416204 SERPINB2P05120 415 aa12.87□□□□□ -0.35
LINC01238-201ENST00000416204 TTLL6Q8N841 843 aa12.87□□□□□ -0.35
LINC01238-201ENST00000416204 BCL2L12Q9HB09 334 aa12.87□□□□□ -0.35
LINC01238-201ENST00000416204 LGR6Q9HBX8 967 aa12.87□□□□□ -0.35
LINC01238-201ENST00000416204 ZBTB1Q9Y2K1 713 aa12.87□□□□□ -0.35
LINC01238-201ENST00000416204 TIAM2Q8IVF5 1701 aa12.86□□□□□ -0.35
LINC01238-201ENST00000416204 CYP19A1P11511 503 aaPredicted RBP12.86□□□□□ -0.35
LINC01238-201ENST00000416204 CANXP27824 592 aaKnown RBP12.86□□□□□ -0.35
LINC01238-201ENST00000416204 ZNF622Q969S3 477 aaKnown RBP eCLIP12.86□□□□□ -0.35
LINC01238-201ENST00000416204 COL15A1P39059 1388 aa12.85□□□□□ -0.35
LINC01238-201ENST00000416204 C21orf2O43822 256 aa12.85□□□□□ -0.35
LINC01238-201ENST00000416204 NARFQ9UHQ1 456 aa12.85□□□□□ -0.35
LINC01238-201ENST00000416204 AFDNP55196 1824 aaKnown RBP12.85□□□□□ -0.35
LINC01238-201ENST00000416204 ZC3H4Q9UPT8 1303 aaKnown RBP12.85□□□□□ -0.35
LINC01238-201ENST00000416204 H0YIN7 160 aa12.84□□□□□ -0.35
LINC01238-201ENST00000416204 FOXN1O15353 648 aa12.84□□□□□ -0.35
LINC01238-201ENST00000416204 ERFEQ4G0M1 354 aa12.84□□□□□ -0.35
LINC01238-201ENST00000416204 PANK3Q9H999 370 aa12.84□□□□□ -0.35
LINC01238-201ENST00000416204 ZNF330Q9Y3S2 320 aaPredicted RBP12.84□□□□□ -0.35
LINC01238-201ENST00000416204 DDNO94850 711 aaPredicted RBP12.83□□□□□ -0.36
LINC01238-201ENST00000416204 MORC1Q86VD1 984 aa12.83□□□□□ -0.36
LINC01238-201ENST00000416204 SLC52A2Q9HAB3 445 aa12.83□□□□□ -0.36
LINC01238-201ENST00000416204 HMOX1P09601 288 aa12.82□□□□□ -0.36
LINC01238-201ENST00000416204 TBC1D9BQ66K14 1250 aa12.82□□□□□ -0.36
LINC01238-201ENST00000416204 CHADLQ6NUI6 762 aa12.82□□□□□ -0.36
LINC01238-201ENST00000416204 DPY19L2Q6NUT2 758 aa12.82□□□□□ -0.36
LINC01238-201ENST00000416204 CCDC88AQ3V6T2 1871 aa12.81□□□□□ -0.36
LINC01238-201ENST00000416204 RNMTO43148 476 aaKnown RBP12.81□□□□□ -0.36
LINC01238-201ENST00000416204 CREBZFQ9NS37 354 aa12.81□□□□□ -0.36
LINC01238-201ENST00000416204 NRXN2Q9P2S2 1712 aa12.8□□□□□ -0.36
LINC01238-201ENST00000416204 DLEC1Q9Y238 1755 aa12.8□□□□□ -0.36
LINC01238-201ENST00000416204 IL13P35225 146 aa12.8□□□□□ -0.36
LINC01238-201ENST00000416204 AKAP4Q5JQC9 854 aa12.8□□□□□ -0.36
LINC01238-201ENST00000416204 TBC1D2BQ9UPU7 963 aa12.8□□□□□ -0.36
LINC01238-201ENST00000416204 SCN11AQ9UI33 1791 aa12.79□□□□□ -0.36
LINC01238-201ENST00000416204 VEGFBP49765 207 aa12.78□□□□□ -0.36
LINC01238-201ENST00000416204 PRR5LQ6MZQ0 368 aa12.78□□□□□ -0.36
LINC01238-201ENST00000416204 TAOK3Q9H2K8 898 aa12.78□□□□□ -0.36
LINC01238-201ENST00000416204 COL11A2P13942 1736 aaPredicted RBP12.78□□□□□ -0.36
LINC01238-201ENST00000416204 CNTNAP1P78357 1384 aa12.78□□□□□ -0.36
LINC01238-201ENST00000416204 NPHP1O15259 732 aa12.77□□□□□ -0.37
LINC01238-201ENST00000416204 LBX1P52954 281 aa12.77□□□□□ -0.37
LINC01238-201ENST00000416204 MTHFSDQ2M296 383 aaKnown RBP12.77□□□□□ -0.37
LINC01238-201ENST00000416204 EAPPQ56P03 285 aaPredicted RBP12.77□□□□□ -0.37
LINC01238-201ENST00000416204 AIDAQ96BJ3 306 aa12.77□□□□□ -0.37
LINC01238-201ENST00000416204 ANKRD31Q8N7Z5 1873 aa12.76□□□□□ -0.37
LINC01238-201ENST00000416204 PDE6BP35913 854 aa12.76□□□□□ -0.37
LINC01238-201ENST00000416204 PIP4K2AP48426 406 aaPredicted RBP12.76□□□□□ -0.37
LINC01238-201ENST00000416204 EIF5P55010 431 aaKnown RBP12.76□□□□□ -0.37
LINC01238-201ENST00000416204 PRPF40BQ6NWY9 871 aaKnown RBP12.76□□□□□ -0.37
LINC01238-201ENST00000416204 OLFM4Q6UX06 510 aa12.76□□□□□ -0.37
LINC01238-201ENST00000416204 BRIP1Q9BX63 1249 aa12.76□□□□□ -0.37
LINC01238-201ENST00000416204 MRC1P22897 1456 aa12.75□□□□□ -0.37
LINC01238-201ENST00000416204 CTCFP49711 727 aaPredicted RBP12.75□□□□□ -0.37
LINC01238-201ENST00000416204 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
LINC01238-201ENST00000416204 CLEC11AQ9Y240 323 aa12.75□□□□□ -0.37
LINC01238-201ENST00000416204 PASKQ96RG2 1323 aa12.74□□□□□ -0.37
LINC01238-201ENST00000416204 STARD3NLO95772 234 aa12.74□□□□□ -0.37
LINC01238-201ENST00000416204 A1BGP04217 495 aa12.74□□□□□ -0.37
LINC01238-201ENST00000416204 HSPA5P11021 654 aaKnown RBP12.74□□□□□ -0.37
LINC01238-201ENST00000416204 CNGB1Q14028 1251 aaPredicted RBP12.74□□□□□ -0.37
LINC01238-201ENST00000416204 FAM161AQ3B820 660 aa12.74□□□□□ -0.37
LINC01238-201ENST00000416204 TTC5Q8N0Z6 440 aa12.74□□□□□ -0.37
LINC01238-201ENST00000416204 CNBD1Q8NA66 436 aa12.74□□□□□ -0.37
LINC01238-201ENST00000416204 ZNF496Q96IT1 587 aaPredicted RBP12.74□□□□□ -0.37
LINC01238-201ENST00000416204 TAF1DQ9H5J8 278 aaPredicted RBP12.74□□□□□ -0.37
LINC01238-201ENST00000416204 ZNF277Q9NRM2 450 aaPredicted RBP12.74□□□□□ -0.37
LINC01238-201ENST00000416204 A0A087WZG4 1122 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 TMEM88BA6NKF7 163 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 LDHDQ86WU2 507 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 VSIG10Q8N0Z9 540 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 PRDM10Q9NQV6 1147 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 FER1L6Q2WGJ9 1857 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 SLX4Q8IY92 1834 aa12.73□□□□□ -0.37
LINC01238-201ENST00000416204 CACNA1SQ13698 1873 aa12.72□□□□□ -0.37
LINC01238-201ENST00000416204 FAM177BA6PVY3 158 aa12.72□□□□□ -0.37
LINC01238-201ENST00000416204 SRGNP10124 158 aa12.72□□□□□ -0.37
LINC01238-201ENST00000416204 GRM1Q13255 1194 aa12.72□□□□□ -0.37
LINC01238-201ENST00000416204 MAP1SQ66K74 1059 aaPredicted RBP12.72□□□□□ -0.37
LINC01238-201ENST00000416204 CNKSR1Q969H4 720 aa12.72□□□□□ -0.37
LINC01238-201ENST00000416204 SETDB2Q96T68 719 aa12.72□□□□□ -0.37
LINC01238-201ENST00000416204 RNF123Q5XPI4 1314 aa12.71□□□□□ -0.37
LINC01238-201ENST00000416204 LTBP3Q9NS15 1303 aa12.71□□□□□ -0.37
LINC01238-201ENST00000416204 IQCA1LA6NCM1 817 aa12.71□□□□□ -0.37
LINC01238-201ENST00000416204 KCNQ3O43525 872 aa12.71□□□□□ -0.37
LINC01238-201ENST00000416204 CAMTA2O94983 1202 aa12.71□□□□□ -0.37
LINC01238-201ENST00000416204 ITGBL1O95965 494 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms