RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 MAMSTRQ6ZN01 415 aa11.67□□□□□ -0.54
SNHG3-201ENST00000413987 TLDC2A0PJX2 215 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 HSP90AB2PQ58FF8 381 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 CCDC146Q8IYE0 955 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 ABTB2Q8N961 1025 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 KCNB2Q92953 911 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 DMRT2Q9Y5R5 561 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 KIF4AO95239 1232 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 FAM161AQ3B820 660 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 CCDC102AQ96A19 550 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 CHMP4BQ9H444 224 aaKnown RBP11.66□□□□□ -0.54
SNHG3-201ENST00000413987 GABBR1Q9UBS5 961 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 POLKQ9UBT6 870 aa11.66□□□□□ -0.54
SNHG3-201ENST00000413987 INSRP06213 1382 aa11.65□□□□□ -0.54
SNHG3-201ENST00000413987 EXOC5O00471 708 aa11.65□□□□□ -0.54
SNHG3-201ENST00000413987 LIG1P18858 919 aa11.65□□□□□ -0.54
SNHG3-201ENST00000413987 NLRP6P59044 892 aa11.65□□□□□ -0.54
SNHG3-201ENST00000413987 SPACA7Q96KW9 195 aa11.65□□□□□ -0.54
SNHG3-201ENST00000413987 LNPKQ9C0E8 428 aa11.65□□□□□ -0.54
SNHG3-201ENST00000413987 OVOS2A0A0J9YW53 1432 aa11.64□□□□□ -0.55
SNHG3-201ENST00000413987 OVOS2Q6IE36 1432 aa11.64□□□□□ -0.55
SNHG3-201ENST00000413987 CENPQQ7L2Z9 268 aaPredicted RBP11.64□□□□□ -0.55
SNHG3-201ENST00000413987 MAP2P11137 1827 aaKnown RBP11.63□□□□□ -0.55
SNHG3-201ENST00000413987 SHPRHQ149N8 1683 aa11.63□□□□□ -0.55
SNHG3-201ENST00000413987 WDR43Q15061 677 aaKnown RBP eCLIP11.63□□□□□ -0.55
SNHG3-201ENST00000413987 BRINP3Q76B58 766 aa11.63□□□□□ -0.55
SNHG3-201ENST00000413987 FRAT2O75474 233 aaPredicted RBP11.63□□□□□ -0.55
SNHG3-201ENST00000413987 SH3D19Q5HYK7 790 aa11.63□□□□□ -0.55
SNHG3-201ENST00000413987 SDR16C5Q8N3Y7 309 aa11.63□□□□□ -0.55
SNHG3-201ENST00000413987 SLAIN2Q9P270 581 aa11.63□□□□□ -0.55
SNHG3-201ENST00000413987 DCCP43146 1447 aa11.62□□□□□ -0.55
SNHG3-201ENST00000413987 MARF1Q9Y4F3 1742 aaKnown RBP11.62□□□□□ -0.55
SNHG3-201ENST00000413987 KRT28Q7Z3Y7 464 aa11.62□□□□□ -0.55
SNHG3-201ENST00000413987 POM121CA8CG34 1229 aa11.62□□□□□ -0.55
SNHG3-201ENST00000413987 VAMP1P23763 118 aa11.62□□□□□ -0.55
SNHG3-201ENST00000413987 NCOA3Q9Y6Q9 1424 aa11.61□□□□□ -0.55
SNHG3-201ENST00000413987 TTC21AQ8NDW8 1320 aa11.61□□□□□ -0.55
SNHG3-201ENST00000413987 SLC4A3P48751 1232 aa11.61□□□□□ -0.55
SNHG3-201ENST00000413987 LTBP4Q8N2S1 1624 aa11.61□□□□□ -0.55
SNHG3-201ENST00000413987 COL3A1P02461 1466 aaPredicted RBP11.61□□□□□ -0.55
SNHG3-201ENST00000413987 CALRP27797 417 aaKnown RBP11.6□□□□□ -0.55
SNHG3-201ENST00000413987 C4orf46Q504U0 113 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 CRBNQ96SW2 442 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 COMMD10Q9Y6G5 202 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 KDM2BQ8NHM5 1336 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 TMEM88BA6NKF7 163 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 CLGNO14967 610 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 SDE2Q6IQ49 451 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 CABLES1Q8TDN4 633 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 ZNF622Q969S3 477 aaKnown RBP eCLIP11.6□□□□□ -0.55
SNHG3-201ENST00000413987 PEAK1Q9H792 1746 aa11.6□□□□□ -0.55
SNHG3-201ENST00000413987 RRP9O43818 475 aaKnown RBP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 U2AF1L5P0DN76 240 aaPredicted RBP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 U2AF1Q01081 240 aaKnown RBP eCLIP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 NPAS4Q8IUM7 802 aa11.59□□□□□ -0.55
SNHG3-201ENST00000413987 CACTIN-AS1Q8N1I8 211 aa11.59□□□□□ -0.55
SNHG3-201ENST00000413987 GNL3LQ9NVN8 582 aaKnown RBP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 MAP3K19Q56UN5 1328 aa11.59□□□□□ -0.55
SNHG3-201ENST00000413987 TRPM3Q9HCF6 1732 aaPredicted RBP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 GPR37O15354 613 aa11.59□□□□□ -0.55
SNHG3-201ENST00000413987 TTLL12Q14166 644 aaPredicted RBP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 CFAP53Q96M91 514 aa11.59□□□□□ -0.55
SNHG3-201ENST00000413987 SNRKQ9NRH2 765 aa11.59□□□□□ -0.55
SNHG3-201ENST00000413987 U3KPZ7 1027 aaPredicted RBP11.59□□□□□ -0.55
SNHG3-201ENST00000413987 BLMP54132 1417 aaPredicted RBP11.58□□□□□ -0.56
SNHG3-201ENST00000413987 IBSPP21815 317 aaPredicted RBP11.58□□□□□ -0.56
SNHG3-201ENST00000413987 C8orf34Q49A92 452 aa11.58□□□□□ -0.56
SNHG3-201ENST00000413987 RRP7AQ9Y3A4 280 aaKnown RBP11.58□□□□□ -0.56
SNHG3-201ENST00000413987 KIF1AQ12756 1690 aa11.58□□□□□ -0.56
SNHG3-201ENST00000413987 USP31Q70CQ4 1352 aa11.58□□□□□ -0.56
SNHG3-201ENST00000413987 WDHD1O75717 1129 aaPredicted RBP11.58□□□□□ -0.56
SNHG3-201ENST00000413987 RECKO95980 971 aa11.58□□□□□ -0.56
SNHG3-201ENST00000413987 HMOX1P09601 288 aa11.58□□□□□ -0.56
SNHG3-201ENST00000413987 DIAPH1O60610 1272 aaKnown RBP11.57□□□□□ -0.56
SNHG3-201ENST00000413987 PDAP1Q13442 181 aaKnown RBP11.57□□□□□ -0.56
SNHG3-201ENST00000413987 AATKQ6ZMQ8 1374 aa11.57□□□□□ -0.56
SNHG3-201ENST00000413987 PXDNQ92626 1479 aa11.57□□□□□ -0.56
SNHG3-201ENST00000413987 APAF1O14727 1248 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 C11orf96Q7Z7L8 435 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 OXER1Q8TDS5 423 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 GDPD2Q9HCC8 539 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 NPHP3Q7Z494 1330 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 PNPLA6Q8IY17 1366 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 HSP90AA1P07900 732 aaKnown RBP11.56□□□□□ -0.56
SNHG3-201ENST00000413987 PIP4K2BP78356 416 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 BECN1Q14457 450 aa11.56□□□□□ -0.56
SNHG3-201ENST00000413987 HSP90AA2PQ14568 343 aaPredicted RBP11.56□□□□□ -0.56
SNHG3-201ENST00000413987 LTV1Q96GA3 475 aaPredicted RBP11.56□□□□□ -0.56
SNHG3-201ENST00000413987 CCDC85AQ96PX6 553 aaPredicted RBP11.56□□□□□ -0.56
SNHG3-201ENST00000413987 RRAGDQ9NQL2 400 aaPredicted RBP11.56□□□□□ -0.56
SNHG3-201ENST00000413987 IRF6O14896 467 aa11.55□□□□□ -0.56
SNHG3-201ENST00000413987 AMPHP49418 695 aa11.55□□□□□ -0.56
SNHG3-201ENST00000413987 MAP2K5Q13163 448 aa11.55□□□□□ -0.56
SNHG3-201ENST00000413987 EIF4A2Q14240 407 aaKnown RBP11.55□□□□□ -0.56
SNHG3-201ENST00000413987 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.55□□□□□ -0.56
SNHG3-201ENST00000413987 CXorf38Q8TB03 319 aa11.55□□□□□ -0.56
SNHG3-201ENST00000413987 PNNQ9H307 717 aaKnown RBP11.55□□□□□ -0.56
SNHG3-201ENST00000413987 JADE2Q9NQC1 790 aa11.55□□□□□ -0.56
SNHG3-201ENST00000413987 CUEDC1Q9NWM3 386 aaPredicted RBP11.55□□□□□ -0.56
SNHG3-201ENST00000413987 CDK12Q9NYV4 1490 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms