RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PLCB2Q00722 1185 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 CHMLP26374 656 aa16.3■□□□□ 0.2
VPS54-203ENST00000409558 HSPA2P54652 639 aa16.3■□□□□ 0.2
VPS54-203ENST00000409558 NFATC2IPQ8NCF5 419 aa16.3■□□□□ 0.2
VPS54-203ENST00000409558 ANKRD26Q9UPS8 1709 aa16.3■□□□□ 0.2
VPS54-203ENST00000409558 KIAA1211Q6ZU35 1233 aa16.3■□□□□ 0.2
VPS54-203ENST00000409558 TECPR2O15040 1411 aa16.3■□□□□ 0.2
VPS54-203ENST00000409558 USP31Q70CQ4 1352 aa16.29■□□□□ 0.2
VPS54-203ENST00000409558 RAPGEF4Q8WZA2 1011 aa16.29■□□□□ 0.2
VPS54-203ENST00000409558 CCDC85AQ96PX6 553 aaPredicted RBP16.29■□□□□ 0.2
VPS54-203ENST00000409558 IFIT2P09913 472 aaKnown RBP16.28■□□□□ 0.2
VPS54-203ENST00000409558 AACSQ86V21 672 aa16.28■□□□□ 0.2
VPS54-203ENST00000409558 EDC3Q96F86 508 aaKnown RBP16.28■□□□□ 0.2
VPS54-203ENST00000409558 BOLA2Q9H3K6 86 aa16.28■□□□□ 0.2
VPS54-203ENST00000409558 DIAPH3Q9NSV4 1193 aa16.28■□□□□ 0.2
VPS54-203ENST00000409558 NSFL1CQ9UNZ2 370 aaKnown RBP16.28■□□□□ 0.2
VPS54-203ENST00000409558 PEAK1Q9H792 1746 aa16.27■□□□□ 0.2
VPS54-203ENST00000409558 MRE11P49959 708 aa16.26■□□□□ 0.19
VPS54-203ENST00000409558 FOSBP53539 338 aa16.26■□□□□ 0.19
VPS54-203ENST00000409558 RGPD8O14715 1765 aaPredicted RBP16.26■□□□□ 0.19
VPS54-203ENST00000409558 SYCE3A1L190 88 aa16.26■□□□□ 0.19
VPS54-203ENST00000409558 RNMTO43148 476 aaKnown RBP16.26■□□□□ 0.19
VPS54-203ENST00000409558 CLASRPQ8N2M8 674 aaKnown RBP16.26■□□□□ 0.19
VPS54-203ENST00000409558 ANP32BQ92688 251 aaKnown RBP16.25■□□□□ 0.19
VPS54-203ENST00000409558 MYD88Q99836 296 aa16.25■□□□□ 0.19
VPS54-203ENST00000409558 NAP1L2Q9ULW6 460 aaPredicted RBP16.25■□□□□ 0.19
VPS54-203ENST00000409558 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.25■□□□□ 0.19
VPS54-203ENST00000409558 ITSN1Q15811 1721 aa16.25■□□□□ 0.19
VPS54-203ENST00000409558 CHGBP05060 677 aa16.25■□□□□ 0.19
VPS54-203ENST00000409558 PRPF40BQ6NWY9 871 aaKnown RBP16.25■□□□□ 0.19
VPS54-203ENST00000409558 KNDC1Q76NI1 1749 aa16.25■□□□□ 0.19
VPS54-203ENST00000409558 CIZ1Q9ULV3 898 aaPredicted RBP16.24■□□□□ 0.19
VPS54-203ENST00000409558 NASPP49321 788 aaPredicted RBP16.24■□□□□ 0.19
VPS54-203ENST00000409558 NUCB2P80303 420 aa16.24■□□□□ 0.19
VPS54-203ENST00000409558 STK3Q13188 491 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 BEND3Q5T5X7 828 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 TLR7Q9NYK1 1049 aaKnown RBP16.23■□□□□ 0.19
VPS54-203ENST00000409558 DBF4Q9UBU7 674 aaPredicted RBP16.23■□□□□ 0.19
VPS54-203ENST00000409558 SETD1AO15047 1707 aaKnown RBP16.23■□□□□ 0.19
VPS54-203ENST00000409558 DDIT3P35638 169 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 COPS6Q7L5N1 327 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 RASEFQ8IZ41 740 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 STRN4Q9NRL3 753 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 ATF3P18847 181 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 CASTP20810 708 aaKnown RBP16.23■□□□□ 0.19
VPS54-203ENST00000409558 KCNH5Q8NCM2 988 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 KIF1BPQ96EK5 621 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 AKAP4Q5JQC9 854 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 XAGE3Q8WTP9 111 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 BICC1Q9H694 974 aaKnown RBP16.23■□□□□ 0.19
VPS54-203ENST00000409558 DIP2AQ14689 1571 aa16.23■□□□□ 0.19
VPS54-203ENST00000409558 KDRP35968 1356 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 VIRMAQ69YN4 1812 aaKnown RBP16.22■□□□□ 0.19
VPS54-203ENST00000409558 G3BP1Q13283 466 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS54-203ENST00000409558 NECAB1Q8N987 351 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 ZDHHC9Q9Y397 364 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 KAT6BQ8WYB5 2073 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 UBR1Q8IWV7 1749 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 DNAJC2Q99543 621 aaKnown RBP16.22■□□□□ 0.19
VPS54-203ENST00000409558 USP16Q9Y5T5 823 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 SUCLG2Q96I99 432 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 C3P01024 1663 aa16.22■□□□□ 0.19
VPS54-203ENST00000409558 FERMT3Q86UX7 667 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 CNTROBQ8N137 903 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 IBTKQ9P2D0 1353 aaPredicted RBP16.21■□□□□ 0.19
VPS54-203ENST00000409558 SSH2Q76I76 1423 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 VPS37CA5D8V6 355 aaPredicted RBP16.21■□□□□ 0.19
VPS54-203ENST00000409558 FIBPO43427 364 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 CCDC83Q8IWF9 413 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 TTC5Q8N0Z6 440 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 FAM227BQ96M60 508 aa16.21■□□□□ 0.19
VPS54-203ENST00000409558 JAKMIP1Q96N16 626 aaKnown RBP16.21■□□□□ 0.19
VPS54-203ENST00000409558 GIGYF1O75420 1035 aaPredicted RBP16.21■□□□□ 0.19
VPS54-203ENST00000409558 PRIM1P49642 420 aaKnown RBP16.21■□□□□ 0.18
VPS54-203ENST00000409558 ARID3AQ99856 593 aa16.21■□□□□ 0.18
VPS54-203ENST00000409558 FSD2A1L4K1 749 aa16.2■□□□□ 0.18
VPS54-203ENST00000409558 HTATSF1O43719 755 aaKnown RBP16.2■□□□□ 0.18
VPS54-203ENST00000409558 PTH1RQ03431 593 aa16.2■□□□□ 0.18
VPS54-203ENST00000409558 UBE3BQ7Z3V4 1068 aa16.2■□□□□ 0.18
VPS54-203ENST00000409558 SSH3Q8TE77 659 aa16.2■□□□□ 0.18
VPS54-203ENST00000409558 COL9A3Q14050 684 aaPredicted RBP16.2■□□□□ 0.18
VPS54-203ENST00000409558 ZNF496Q96IT1 587 aaPredicted RBP16.2■□□□□ 0.18
VPS54-203ENST00000409558 FSD1Q9BTV5 496 aa16.2■□□□□ 0.18
VPS54-203ENST00000409558 SLFNL1Q499Z3 407 aa16.19■□□□□ 0.18
VPS54-203ENST00000409558 ARHGEF25Q86VW2 580 aa16.19■□□□□ 0.18
VPS54-203ENST00000409558 FAM43AQ8N2R8 423 aa16.19■□□□□ 0.18
VPS54-203ENST00000409558 NEUROD6Q96NK8 337 aa16.19■□□□□ 0.18
VPS54-203ENST00000409558 ZSCAN23Q3MJ62 389 aa16.19■□□□□ 0.18
VPS54-203ENST00000409558 SKOR2Q2VWA4 1001 aaPredicted RBP16.19■□□□□ 0.18
VPS54-203ENST00000409558 LMBRD1Q9NUN5 540 aa16.19■□□□□ 0.18
VPS54-203ENST00000409558 GPT2Q8TD30 523 aa16.18■□□□□ 0.18
VPS54-203ENST00000409558 GADD45BO75293 160 aaPredicted RBP16.18■□□□□ 0.18
VPS54-203ENST00000409558 ADCK5Q3MIX3 580 aa16.18■□□□□ 0.18
VPS54-203ENST00000409558 MON2Q7Z3U7 1717 aa16.18■□□□□ 0.18
VPS54-203ENST00000409558 FAM173BQ6P4H8 233 aa16.18■□□□□ 0.18
VPS54-203ENST00000409558 KIF13AQ9H1H9 1805 aa16.18■□□□□ 0.18
VPS54-203ENST00000409558 NEXNQ0ZGT2 675 aa16.18■□□□□ 0.18
VPS54-203ENST00000409558 TATP17735 454 aaPredicted RBP16.17■□□□□ 0.18
VPS54-203ENST00000409558 AK2P54819 239 aa16.17■□□□□ 0.18
VPS54-203ENST00000409558 LRRC2Q9BYS8 371 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms