RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SNRPA1P09661 255 aaKnown RBP17.77■□□□□ 0.44
GPNMB-203ENST00000409458 DDB1Q16531 1140 aa17.77■□□□□ 0.44
GPNMB-203ENST00000409458 SLC4A10Q6U841 1118 aa17.77■□□□□ 0.44
GPNMB-203ENST00000409458 C1orf115Q9H7X2 142 aa17.77■□□□□ 0.44
GPNMB-203ENST00000409458 CCT4P50991 539 aaKnown RBP17.76■□□□□ 0.43
GPNMB-203ENST00000409458 PDIA6Q15084 440 aa17.76■□□□□ 0.43
GPNMB-203ENST00000409458 USP21Q9UK80 565 aa17.76■□□□□ 0.43
GPNMB-203ENST00000409458 HDAC1Q13547 482 aaPredicted RBP17.75■□□□□ 0.43
GPNMB-203ENST00000409458 MEX3CQ5U5Q3 659 aaKnown RBP17.75■□□□□ 0.43
GPNMB-203ENST00000409458 PIGBQ92521 554 aa17.75■□□□□ 0.43
GPNMB-203ENST00000409458 RWDD1Q9H446 243 aaPredicted RBP17.75■□□□□ 0.43
GPNMB-203ENST00000409458 USP16Q9Y5T5 823 aa17.75■□□□□ 0.43
GPNMB-203ENST00000409458 BCL9O00512 1426 aa17.75■□□□□ 0.43
GPNMB-203ENST00000409458 ADCY9O60503 1353 aa17.74■□□□□ 0.43
GPNMB-203ENST00000409458 FAM98CQ17RN3 349 aaKnown RBP17.74■□□□□ 0.43
GPNMB-203ENST00000409458 DDX21Q9NR30 783 aaKnown RBP eCLIP17.74■□□□□ 0.43
GPNMB-203ENST00000409458 THSD7AQ9UPZ6 1657 aa17.74■□□□□ 0.43
GPNMB-203ENST00000409458 MEIS3Q99687 375 aa17.74■□□□□ 0.43
GPNMB-203ENST00000409458 HYPKQ9NX55 129 aa17.74■□□□□ 0.43
GPNMB-203ENST00000409458 MARCH10Q8NA82 808 aaPredicted RBP17.73■□□□□ 0.43
GPNMB-203ENST00000409458 ATP10DQ9P241 1426 aa17.73■□□□□ 0.43
GPNMB-203ENST00000409458 TSHZ2Q9NRE2 1034 aa17.72■□□□□ 0.43
GPNMB-203ENST00000409458 ATG3Q9NT62 314 aa17.72■□□□□ 0.43
GPNMB-203ENST00000409458 ASAP1Q9ULH1 1129 aa17.72■□□□□ 0.43
GPNMB-203ENST00000409458 PI4KAP2A4QPH2 592 aa17.71■□□□□ 0.43
GPNMB-203ENST00000409458 PTCD1O75127 700 aaKnown RBP17.71■□□□□ 0.43
GPNMB-203ENST00000409458 PI4KAP1Q8N8J0 262 aa17.71■□□□□ 0.43
GPNMB-203ENST00000409458 AFF2P51816 1311 aa17.71■□□□□ 0.43
GPNMB-203ENST00000409458 MYL6BP14649 208 aa17.71■□□□□ 0.42
GPNMB-203ENST00000409458 LRP10Q7Z4F1 713 aa17.71■□□□□ 0.42
GPNMB-203ENST00000409458 DNAAF4Q8WXU2 420 aa17.71■□□□□ 0.42
GPNMB-203ENST00000409458 PIP4K2AP48426 406 aaPredicted RBP17.7■□□□□ 0.42
GPNMB-203ENST00000409458 SIRT2Q8IXJ6 389 aa17.7■□□□□ 0.42
GPNMB-203ENST00000409458 SYTL4Q96C24 671 aaPredicted RBP17.7■□□□□ 0.42
GPNMB-203ENST00000409458 KAT6BQ8WYB5 2073 aa17.69■□□□□ 0.42
GPNMB-203ENST00000409458 PRIM1P49642 420 aaKnown RBP17.69■□□□□ 0.42
GPNMB-203ENST00000409458 ATRNO75882 1429 aa17.69■□□□□ 0.42
GPNMB-203ENST00000409458 AIMP1Q12904 312 aaKnown RBP17.68■□□□□ 0.42
GPNMB-203ENST00000409458 BEND3Q5T5X7 828 aa17.68■□□□□ 0.42
GPNMB-203ENST00000409458 KSR2Q6VAB6 950 aa17.68■□□□□ 0.42
GPNMB-203ENST00000409458 POTEDQ86YR6 584 aa17.68■□□□□ 0.42
GPNMB-203ENST00000409458 MAP3K2Q9Y2U5 619 aa17.68■□□□□ 0.42
GPNMB-203ENST00000409458 TJP1Q07157 1748 aa17.68■□□□□ 0.42
GPNMB-203ENST00000409458 ARFGEF2Q9Y6D5 1785 aa17.68■□□□□ 0.42
GPNMB-203ENST00000409458 XAGE3Q8WTP9 111 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 ACSBG1Q96GR2 724 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 SRCIN1Q9C0H9 1055 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 ERBB4Q15303 1308 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 CEP85Q6P2H3 762 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 SMC5Q8IY18 1101 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 PDZRN3Q9UPQ7 1066 aa17.67■□□□□ 0.42
GPNMB-203ENST00000409458 NBPF26B4DH59 902 aa17.66■□□□□ 0.42
GPNMB-203ENST00000409458 DDX58O95786 925 aaKnown RBP17.66■□□□□ 0.42
GPNMB-203ENST00000409458 NBPF14Q5TI25 921 aa17.66■□□□□ 0.42
GPNMB-203ENST00000409458 NBPF10Q6P3W6 841 aaKnown RBP17.66■□□□□ 0.42
GPNMB-203ENST00000409458 COPS6Q7L5N1 327 aa17.66■□□□□ 0.42
GPNMB-203ENST00000409458 NBPF15Q8N660 670 aa17.66■□□□□ 0.42
GPNMB-203ENST00000409458 A0A0G2JS52 829 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 RGS3P49796 1198 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 MYT1Q01538 1121 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 VSIG10Q8N0Z9 540 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 ANKRD44Q8N8A2 993 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 GJD4Q96KN9 370 aaPredicted RBP17.65■□□□□ 0.42
GPNMB-203ENST00000409458 RBM42Q9BTD8 480 aaKnown RBP17.65■□□□□ 0.42
GPNMB-203ENST00000409458 USP44Q9H0E7 712 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 NUP188Q5SRE5 1749 aa17.65■□□□□ 0.42
GPNMB-203ENST00000409458 GNAI3P08754 354 aa17.64■□□□□ 0.42
GPNMB-203ENST00000409458 DNAJC10Q8IXB1 793 aa17.64■□□□□ 0.42
GPNMB-203ENST00000409458 A1BGP04217 495 aa17.64■□□□□ 0.41
GPNMB-203ENST00000409458 GNAI2P04899 355 aa17.64■□□□□ 0.41
GPNMB-203ENST00000409458 SLC4A9Q96Q91 983 aa17.64■□□□□ 0.41
GPNMB-203ENST00000409458 RIC3Q7Z5B4 369 aa17.63■□□□□ 0.41
GPNMB-203ENST00000409458 RPAP2Q8IXW5 612 aaPredicted RBP17.63■□□□□ 0.41
GPNMB-203ENST00000409458 TRPC5Q9UL62 973 aaPredicted RBP17.63■□□□□ 0.41
GPNMB-203ENST00000409458 CICQ96RK0 1608 aaPredicted RBP17.62■□□□□ 0.41
GPNMB-203ENST00000409458 AFDNP55196 1824 aaKnown RBP17.62■□□□□ 0.41
GPNMB-203ENST00000409458 ALDH1L1O75891 902 aa17.61■□□□□ 0.41
GPNMB-203ENST00000409458 UBTFL1P0CB47 393 aaPredicted RBP17.61■□□□□ 0.41
GPNMB-203ENST00000409458 CWF19L2Q2TBE0 894 aaKnown RBP17.61■□□□□ 0.41
GPNMB-203ENST00000409458 TEX13AQ9BXU3 409 aaPredicted RBP17.61■□□□□ 0.41
GPNMB-203ENST00000409458 LRRFIP2Q9Y608 721 aaKnown RBP17.61■□□□□ 0.41
GPNMB-203ENST00000409458 ANKRD13DQ6ZTN6 518 aa17.61■□□□□ 0.41
GPNMB-203ENST00000409458 GCC1Q96CN9 775 aa17.61■□□□□ 0.41
GPNMB-203ENST00000409458 NHSQ6T4R5 1651 aa17.6■□□□□ 0.41
GPNMB-203ENST00000409458 KCNQ2O43526 872 aa17.6■□□□□ 0.41
GPNMB-203ENST00000409458 NBPF7P0C2Y1 421 aaPredicted RBP17.6■□□□□ 0.41
GPNMB-203ENST00000409458 NUCB1Q02818 461 aa17.6■□□□□ 0.41
GPNMB-203ENST00000409458 LINS1Q8NG48 757 aa17.6■□□□□ 0.41
GPNMB-203ENST00000409458 METTL22Q9BUU2 404 aaPredicted RBP17.6■□□□□ 0.41
GPNMB-203ENST00000409458 IGKV5-2P06315 115 aa17.59■□□□□ 0.41
GPNMB-203ENST00000409458 MYD88Q99836 296 aa17.59■□□□□ 0.41
GPNMB-203ENST00000409458 STARD3NLO95772 234 aa17.58■□□□□ 0.41
GPNMB-203ENST00000409458 PDE4AP27815 886 aa17.58■□□□□ 0.41
GPNMB-203ENST00000409458 TTLL7Q6ZT98 887 aa17.58■□□□□ 0.41
GPNMB-203ENST00000409458 PLBD2Q8NHP8 589 aa17.58■□□□□ 0.41
GPNMB-203ENST00000409458 DCTPP1Q9H773 170 aa17.58■□□□□ 0.41
GPNMB-203ENST00000409458 PALLDQ8WX93 1383 aa17.58■□□□□ 0.41
GPNMB-203ENST00000409458 CYP19A1P11511 503 aaPredicted RBP17.58■□□□□ 0.4
GPNMB-203ENST00000409458 IBTKQ9P2D0 1353 aaPredicted RBP17.58■□□□□ 0.4
GPNMB-203ENST00000409458 BTAF1O14981 1849 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms