RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ST7Q9NRC1 585 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 TROQ12816 1431 aaPredicted RBP10.88□□□□□ -0.67
COL28A1-201ENST00000399429 COG3Q96JB2 828 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 ZNF396Q96N95 335 aaPredicted RBP10.88□□□□□ -0.67
COL28A1-201ENST00000399429 MIS18AQ9NYP9 233 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 POLR3AO14802 1390 aaPredicted RBP10.88□□□□□ -0.67
COL28A1-201ENST00000399429 EVCP57679 992 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 AOPEPQ8N6M6 819 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 ANKRD44Q8N8A2 993 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 CHMP4CQ96CF2 233 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 SH2B1Q9NRF2 756 aaPredicted RBP10.88□□□□□ -0.67
COL28A1-201ENST00000399429 ANKRD36BQ8N2N9 1353 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 ANAPC15P60006 121 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 KIF4BQ2VIQ3 1234 aa10.88□□□□□ -0.67
COL28A1-201ENST00000399429 AKAP17AQ02040 695 aaKnown RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 GUCY1B3Q02153 619 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 CARD6Q9BX69 1037 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 GRIN2BQ13224 1484 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 CCDC141Q6ZP82 1450 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 TOP1P11387 765 aaKnown RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 LIG1P18858 919 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 CCT4P50991 539 aaKnown RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 STK11IPQ8N1F8 1099 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 MRPL50Q8N5N7 158 aaKnown RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 MBIPQ9NS73 344 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 RNF216Q9NWF9 866 aaPredicted RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 BCORL1Q5H9F3 1711 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 RAD51AP2Q09MP3 1159 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 DHX8Q14562 1220 aaKnown RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 ANKRD1Q15327 319 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 SMARCC1Q92922 1105 aaPredicted RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 IPO7O95373 1038 aaKnown RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 TDO2P48775 406 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 FSIP1Q8NA03 581 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 BANK1Q8NDB2 785 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 CCDC12Q8WUD4 166 aaPredicted RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 MYCBPQ99417 103 aaPredicted RBP10.87□□□□□ -0.67
COL28A1-201ENST00000399429 ZDHHC9Q9Y397 364 aa10.87□□□□□ -0.67
COL28A1-201ENST00000399429 TCOF1Q13428 1488 aaKnown RBP10.86□□□□□ -0.67
COL28A1-201ENST00000399429 KIF14Q15058 1648 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 FBLN1P23142 703 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CLEC17AQ6ZS10 378 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CCAR1Q8IX12 1150 aaKnown RBP10.86□□□□□ -0.67
COL28A1-201ENST00000399429 ARHGAP45Q92619 1136 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CRACR2AQ9BSW2 395 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 SPTLC3Q9NUV7 552 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 SNAPC4Q5SXM2 1469 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 FAM83GA6ND36 823 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 SRGAP3O43295 1099 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CAVIN2O95810 425 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 SMC1AQ14683 1233 aaKnown RBP10.86□□□□□ -0.67
COL28A1-201ENST00000399429 KMT5BQ4FZB7 885 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CCDC91Q7Z6B0 441 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CACTINQ8WUQ7 758 aaKnown RBP10.86□□□□□ -0.67
COL28A1-201ENST00000399429 LTV1Q96GA3 475 aaPredicted RBP10.86□□□□□ -0.67
COL28A1-201ENST00000399429 PALD1Q9ULE6 856 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 CBFA2T2O43439 604 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 VAMP4O75379 141 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 E2F4Q16254 413 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 HSP90AB4PQ58FF6 505 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 HSP90AA4PQ58FG1 418 aa10.86□□□□□ -0.67
COL28A1-201ENST00000399429 THOC2Q8NI27 1593 aaKnown RBP10.86□□□□□ -0.67
COL28A1-201ENST00000399429 TULP1O00294 542 aaPredicted RBP10.85□□□□□ -0.67
COL28A1-201ENST00000399429 C8orf58Q8NAV2 365 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 KDM5CP41229 1560 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 KIAA0586Q9BVV6 1533 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 SHTN1A0MZ66 631 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 DDIT3P35638 169 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 G3BP1Q13283 466 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL28A1-201ENST00000399429 CCDC150Q8NCX0 1101 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 ANKRD20A12PQ8NF67 263 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 CTAGE5O15320 804 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 SLFN14P0C7P3 912 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 NPHP3Q7Z494 1330 aa10.85□□□□□ -0.67
COL28A1-201ENST00000399429 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 ANKRD7Q92527 254 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 MORC2Q9Y6X9 1032 aaPredicted RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 IL16Q14005 1332 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 VGFO15240 615 aaPredicted RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 LMOD1P29536 600 aaPredicted RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 CEP85Q6P2H3 762 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 PPFIBP1Q86W92 1011 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 GBP3Q9H0R5 595 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 CHMLP26374 656 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 SULT6B1Q6IMI4 303 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 MCM10Q7L590 875 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 CPLX3Q8WVH0 158 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 IFNKQ9P0W0 207 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 SCAF11Q99590 1463 aaKnown RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 KIF21AQ7Z4S6 1674 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 MYO1CO00159 1063 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 CLGNO14967 610 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 SEC31AO94979 1220 aaKnown RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 ATP2B1P20020 1258 aa10.84□□□□□ -0.67
COL28A1-201ENST00000399429 PUF60Q9UHX1 559 aaKnown RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 HOOK1Q9UJC3 728 aaKnown RBP10.84□□□□□ -0.67
COL28A1-201ENST00000399429 ADGRF5Q8IZF2 1346 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 DENND4BO75064 1496 aaPredicted RBP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 LOC102724159A0A0B4J2E5 919 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 PWP2Q15269 919 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms