RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 WASHC4Q2M389 1173 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 CCDC85AQ96PX6 553 aaPredicted RBP10.06□□□□□ -0.8
PTPRD-204ENST00000397606 PLEKHF1Q96S99 279 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 NBR1Q14596 966 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 ZNF772Q68DY9 489 aaPredicted RBP10.06□□□□□ -0.8
PTPRD-204ENST00000397606 UBE3BQ7Z3V4 1068 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 AACSQ86V21 672 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 LINS1Q8NG48 757 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 AKAP2Q9Y2D5 859 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 RTCBQ9Y3I0 505 aaKnown RBP10.06□□□□□ -0.8
PTPRD-204ENST00000397606 PHF14O94880 888 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 EXOC6BQ9Y2D4 811 aa10.06□□□□□ -0.8
PTPRD-204ENST00000397606 DNAJC2Q99543 621 aaKnown RBP10.05□□□□□ -0.8
PTPRD-204ENST00000397606 SPINK5Q9NQ38 1064 aaPredicted RBP10.05□□□□□ -0.8
PTPRD-204ENST00000397606 DCCP43146 1447 aa10.05□□□□□ -0.8
PTPRD-204ENST00000397606 IL17REQ8NFR9 667 aa10.05□□□□□ -0.8
PTPRD-204ENST00000397606 ANKRD18BA2A2Z9 1011 aa10.05□□□□□ -0.8
PTPRD-204ENST00000397606 METTL24Q5JXM2 366 aa10.05□□□□□ -0.8
PTPRD-204ENST00000397606 DZIP3Q86Y13 1208 aaKnown RBP10.05□□□□□ -0.8
PTPRD-204ENST00000397606 UNC5CLQ8IV45 518 aa10.05□□□□□ -0.8
PTPRD-204ENST00000397606 QTRT2Q9H974 415 aaKnown RBP10.05□□□□□ -0.8
PTPRD-204ENST00000397606 THRAP3Q9Y2W1 955 aaKnown RBP10.05□□□□□ -0.8
PTPRD-204ENST00000397606 TRDNQ13061 729 aa10.05□□□□□ -0.8
PTPRD-204ENST00000397606 GNL2Q13823 731 aaKnown RBP10.04□□□□□ -0.8
PTPRD-204ENST00000397606 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.04□□□□□ -0.8
PTPRD-204ENST00000397606 IL1RAPL2Q9NP60 686 aa10.04□□□□□ -0.8
PTPRD-204ENST00000397606 ZRSR1Q15695 479 aaKnown RBP10.04□□□□□ -0.8
PTPRD-204ENST00000397606 SPRYD3Q8NCJ5 442 aa10.04□□□□□ -0.8
PTPRD-204ENST00000397606 TRIM34Q9BYJ4 488 aa10.04□□□□□ -0.8
PTPRD-204ENST00000397606 CCNL1Q9UK58 526 aaPredicted RBP10.04□□□□□ -0.8
PTPRD-204ENST00000397606 KIF3AQ9Y496 699 aa10.04□□□□□ -0.8
PTPRD-204ENST00000397606 SETDB2Q96T68 719 aa10.04□□□□□ -0.8
PTPRD-204ENST00000397606 GRM8O00222 908 aa10.03□□□□□ -0.8
PTPRD-204ENST00000397606 EIF4A1P60842 406 aaKnown RBP10.03□□□□□ -0.8
PTPRD-204ENST00000397606 NBPF5PQ86XG9 351 aaPredicted RBP10.03□□□□□ -0.8
PTPRD-204ENST00000397606 ZNF496Q96IT1 587 aaPredicted RBP10.03□□□□□ -0.8
PTPRD-204ENST00000397606 CDC5LQ99459 802 aaKnown RBP10.03□□□□□ -0.8
PTPRD-204ENST00000397606 JCADQ9P266 1359 aa10.03□□□□□ -0.8
PTPRD-204ENST00000397606 IQGAP1P46940 1657 aa10.03□□□□□ -0.8
PTPRD-204ENST00000397606 DCAF8L1A6NGE4 600 aa10.03□□□□□ -0.8
PTPRD-204ENST00000397606 RPGRQ92834 1020 aaKnown RBP10.03□□□□□ -0.8
PTPRD-204ENST00000397606 MYO3AQ8NEV4 1616 aa10.03□□□□□ -0.8
PTPRD-204ENST00000397606 GOLGA6L4A6NEF3 574 aa10.02□□□□□ -0.8
PTPRD-204ENST00000397606 IFIT1P09914 478 aaKnown RBP10.02□□□□□ -0.8
PTPRD-204ENST00000397606 PIP4K2AP48426 406 aaPredicted RBP10.02□□□□□ -0.8
PTPRD-204ENST00000397606 ZSCAN25Q6NSZ9 544 aa10.02□□□□□ -0.81
PTPRD-204ENST00000397606 SYNE3Q6ZMZ3 975 aa10.02□□□□□ -0.81
PTPRD-204ENST00000397606 TFCP2L1Q9NZI6 479 aa10.02□□□□□ -0.81
PTPRD-204ENST00000397606 NIP7Q9Y221 180 aaKnown RBP eCLIP10.02□□□□□ -0.81
PTPRD-204ENST00000397606 MEIS3Q99687 375 aa10.02□□□□□ -0.81
PTPRD-204ENST00000397606 ST5P78524 1137 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 NBPF14Q5TI25 921 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 C3P01024 1663 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 NYXQ9GZU5 481 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 NOL8Q76FK4 1167 aaKnown RBP10.01□□□□□ -0.81
PTPRD-204ENST00000397606 DDX46Q7L014 1031 aaKnown RBP10.01□□□□□ -0.81
PTPRD-204ENST00000397606 TSHZ2Q9NRE2 1034 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 AXIN2Q9Y2T1 843 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 GNPATO15228 680 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 GLRX3O76003 335 aaKnown RBP10.01□□□□□ -0.81
PTPRD-204ENST00000397606 CCDC152Q4G0S7 254 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 CPLX2Q6PUV4 134 aaKnown RBP10.01□□□□□ -0.81
PTPRD-204ENST00000397606 PLBD2Q8NHP8 589 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 PHAXQ9H814 394 aaKnown RBP10.01□□□□□ -0.81
PTPRD-204ENST00000397606 CPS1P31327 1500 aa10.01□□□□□ -0.81
PTPRD-204ENST00000397606 CAVIN4Q5BKX8 364 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 TRAPPC3LQ5T215 181 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 LDHAL6AQ6ZMR3 332 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 DNAJC10Q8IXB1 793 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 UTP14AQ9BVJ6 771 aaKnown RBP10□□□□□ -0.81
PTPRD-204ENST00000397606 MX1P20591 662 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 FKBP4Q02790 459 aaKnown RBP eCLIP10□□□□□ -0.81
PTPRD-204ENST00000397606 TPTE2Q6XPS3 522 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 GIGYF1O75420 1035 aaPredicted RBP10□□□□□ -0.81
PTPRD-204ENST00000397606 NLRP3Q96P20 1036 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 IPO9Q96P70 1041 aaKnown RBP10□□□□□ -0.81
PTPRD-204ENST00000397606 C22orf23Q9BZE7 217 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 CCDC87Q9NVE4 849 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 PNPLA6Q8IY17 1366 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 RALYLQ86SE5 291 aaKnown RBP10□□□□□ -0.81
PTPRD-204ENST00000397606 SOS2Q07890 1332 aaPredicted RBP10□□□□□ -0.81
PTPRD-204ENST00000397606 SPATA31A6Q5VVP1 1343 aa10□□□□□ -0.81
PTPRD-204ENST00000397606 RXRBP28702 533 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 ERBB4Q15303 1308 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 HDAC1Q13547 482 aaPredicted RBP9.99□□□□□ -0.81
PTPRD-204ENST00000397606 NUTM1Q86Y26 1132 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 ANKRD44Q8N8A2 993 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 SLKQ9H2G2 1235 aaPredicted RBP9.99□□□□□ -0.81
PTPRD-204ENST00000397606 ANKIB1Q9P2G1 1089 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 OVOS2A0A0J9YW53 1432 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 OVOS2Q6IE36 1432 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 A1BGP04217 495 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 SLC5A1P13866 664 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 FAM196AQ6ZSG2 479 aa9.99□□□□□ -0.81
PTPRD-204ENST00000397606 TPRNQ4KMQ1 711 aa9.98□□□□□ -0.81
PTPRD-204ENST00000397606 PARP10Q53GL7 1025 aa9.98□□□□□ -0.81
PTPRD-204ENST00000397606 GBP4Q96PP9 640 aa9.98□□□□□ -0.81
PTPRD-204ENST00000397606 ERICH2A1L162 156 aa9.98□□□□□ -0.81
PTPRD-204ENST00000397606 G2E3Q7L622 706 aa9.98□□□□□ -0.81
PTPRD-204ENST00000397606 METTL22Q9BUU2 404 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms