RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 IFIT5Q13325 482 aaKnown RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 DDB1Q16531 1140 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 FAM184AQ8NB25 1140 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 KIF1AQ12756 1690 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 PDZRN3Q9UPQ7 1066 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 PI4KAP2A4QPH2 592 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CDKL5O76039 1030 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 PI4KAP1Q8N8J0 262 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 DDX54Q8TDD1 881 aaKnown RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 EVI5LQ96CN4 794 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 AOX1Q06278 1338 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 TPM4P67936 248 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 AIMP1Q12904 312 aaKnown RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CARD10Q9BWT7 1032 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 ADAMTS13Q76LX8 1427 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 G3V3G9 751 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 AKAP17AQ02040 695 aaKnown RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 DCAF8Q5TAQ9 597 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 PHACTR3Q96KR7 559 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CHD2O14647 1828 aaKnown RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CCDC196A0A1B0GTZ2 297 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CAVIN2O95810 425 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 NGLY1Q96IV0 654 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 AK7Q96M32 723 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CWC25Q9NXE8 425 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 TRIM35Q9UPQ4 493 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 THRAP3Q9Y2W1 955 aaKnown RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 PPP1R42Q7Z4L9 355 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 PLEKHF1Q96S99 279 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 CDC5LQ99459 802 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 MAP1BP46821 2468 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 CDK11BP21127 795 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 NUCB1Q02818 461 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 CCDC191Q8NCU4 936 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 ECHDC1Q9NTX5 307 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 MON2Q7Z3U7 1717 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 IGHMBP2P38935 993 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 JMYQ8N9B5 988 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 RBM33Q96EV2 1170 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 OVOS2A0A0G2JMS6 1433 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 CHAF1AQ13111 956 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 MYOM1P52179 1685 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 CFAP45Q9UL16 551 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 SAFBQ15424 915 aaKnown RBP eCLIP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 MPRIPQ6WCQ1 1025 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 VSIG10Q8N0Z9 540 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 MTHFSDQ2M296 383 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 PARP10Q53GL7 1025 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 ZSCAN31Q96LW9 406 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 SLKQ9H2G2 1235 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 SH2B1Q9NRF2 756 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 OVOS2A0A0J9YW53 1432 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 OVOS2Q6IE36 1432 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 TPM3P06753 285 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 AEBP1Q8IUX7 1158 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 IL15P40933 162 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 TRIM29Q14134 588 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 KLHL34Q8N239 644 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 FSD1Q9BTV5 496 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 WDR33Q9C0J8 1336 aaKnown RBP4.05□□□□□ -1.76
VPS13C-203ENST00000395896 LMTK3Q96Q04 1460 aa4.05□□□□□ -1.76
VPS13C-203ENST00000395896 RAD50Q92878 1312 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 LETM1O95202 739 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 SLF2Q8IX21 1173 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 WDR17Q8IZU2 1322 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 H3BQV1 296 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 IFFO2Q5TF58 517 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 CYP46A1Q9Y6A2 500 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 SIGLEC1Q9BZZ2 1709 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 ZPR1O75312 459 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 IFIT1P09914 478 aaKnown RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 NEUROD6Q96NK8 337 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 ORAI2Q96SN7 254 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 CNNM1Q9NRU3 951 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 GSE1Q14687 1217 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 ABCC4O15439 1325 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 SMC3Q9UQE7 1217 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 DLG5Q8TDM6 1919 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 LRRC7Q96NW7 1537 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 MYL6BP14649 208 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 PPP4R3BQ5MIZ7 849 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 MRPL50Q8N5N7 158 aaKnown RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 NFATC2IPQ8NCF5 419 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 ZBTB7BO15156 539 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 ZGPATQ8N5A5 531 aaKnown RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 NYXQ9GZU5 481 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 NEK4P51957 841 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 UBE3BQ7Z3V4 1068 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 SLC52A2Q9HAB3 445 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 HMGN5P82970 282 aaKnown RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 KIAA2012Q0VF49 1180 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 CAVIN4Q5BKX8 364 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 BLOC1S2Q6QNY1 142 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 BRMS1Q9HCU9 246 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 DDX49Q9Y6V7 483 aaKnown RBP4.04□□□□□ -1.76
VPS13C-203ENST00000395896 AKAP12Q02952 1782 aa4.04□□□□□ -1.76
VPS13C-203ENST00000395896 CPDO75976 1380 aa4.03□□□□□ -1.76
VPS13C-203ENST00000395896 DCTN1Q14203 1278 aa4.03□□□□□ -1.76
VPS13C-203ENST00000395896 RNF41Q9H4P4 317 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-203ENST00000395896 MAP3K12Q12852 859 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms