RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PALLDQ8WX93 1383 aa10.12□□□□□ -0.79
LIMS1-203ENST00000393310 ZC3H12CQ9C0D7 883 aaKnown RBP10.12□□□□□ -0.79
LIMS1-203ENST00000393310 KDM5AP29375 1690 aaKnown RBP10.11□□□□□ -0.79
LIMS1-203ENST00000393310 CPDO75976 1380 aa10.11□□□□□ -0.79
LIMS1-203ENST00000393310 FLT4P35916 1363 aa10.11□□□□□ -0.79
LIMS1-203ENST00000393310 IRX3P78415 501 aaPredicted RBP10.11□□□□□ -0.79
LIMS1-203ENST00000393310 LDHDQ86WU2 507 aa10.11□□□□□ -0.79
LIMS1-203ENST00000393310 GPATCH11Q8N954 259 aa10.11□□□□□ -0.79
LIMS1-203ENST00000393310 PCDH10Q9P2E7 1040 aa10.11□□□□□ -0.79
LIMS1-203ENST00000393310 TMEM88BA6NKF7 163 aa10.1□□□□□ -0.79
LIMS1-203ENST00000393310 ALDH1A1P00352 501 aa10.1□□□□□ -0.79
LIMS1-203ENST00000393310 RBM5P52756 815 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMS1-203ENST00000393310 SREBF2Q12772 1141 aa10.1□□□□□ -0.79
LIMS1-203ENST00000393310 ANKRD13DQ6ZTN6 518 aa10.1□□□□□ -0.79
LIMS1-203ENST00000393310 RC3H1Q5TC82 1133 aaKnown RBP10.1□□□□□ -0.79
LIMS1-203ENST00000393310 TAF3Q5VWG9 929 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 NGEFQ8N5V2 710 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 MKRN1Q9UHC7 482 aaKnown RBP10.09□□□□□ -0.79
LIMS1-203ENST00000393310 PPIP5K2O43314 1243 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 PPP1R12BO60237 982 aaPredicted RBP10.09□□□□□ -0.79
LIMS1-203ENST00000393310 AMOTL1Q8IY63 956 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 ZNF710Q8N1W2 664 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 SETQ01105 290 aaPredicted RBP10.09□□□□□ -0.79
LIMS1-203ENST00000393310 NME9Q86XW9 330 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 UNC13BO14795 1591 aa10.09□□□□□ -0.79
LIMS1-203ENST00000393310 HSPA1AP0DMV8 641 aaKnown RBP10.08□□□□□ -0.8
LIMS1-203ENST00000393310 HSPA1BP0DMV9 641 aaKnown RBP10.08□□□□□ -0.8
LIMS1-203ENST00000393310 L3MBTL2Q969R5 705 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 NOGQ13253 232 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 MASTLQ96GX5 879 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 CHMP3Q9Y3E7 222 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 DLC1Q96QB1 1528 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 PARP10Q53GL7 1025 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 KLRG1Q96E93 195 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 HTATIP2Q9BUP3 242 aa10.08□□□□□ -0.8
LIMS1-203ENST00000393310 SERPINB2P05120 415 aa10.07□□□□□ -0.8
LIMS1-203ENST00000393310 NPR1P16066 1061 aa10.07□□□□□ -0.8
LIMS1-203ENST00000393310 AXDND1Q5T1B0 1012 aaPredicted RBP10.07□□□□□ -0.8
LIMS1-203ENST00000393310 TSPYL2Q9H2G4 693 aaPredicted RBP10.07□□□□□ -0.8
LIMS1-203ENST00000393310 ATP10DQ9P241 1426 aa10.07□□□□□ -0.8
LIMS1-203ENST00000393310 RAD21O60216 631 aa10.07□□□□□ -0.8
LIMS1-203ENST00000393310 ZFP91Q96JP5 570 aaPredicted RBP10.07□□□□□ -0.8
LIMS1-203ENST00000393310 RRP7AQ9Y3A4 280 aaKnown RBP10.07□□□□□ -0.8
LIMS1-203ENST00000393310 CEP152O94986 1710 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 PRELPP51888 382 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 MARCH10Q8NA82 808 aaPredicted RBP10.06□□□□□ -0.8
LIMS1-203ENST00000393310 DDRGK1Q96HY6 314 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 CDC5LQ99459 802 aaKnown RBP10.06□□□□□ -0.8
LIMS1-203ENST00000393310 KIF1AQ12756 1690 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 IGHMBP2P38935 993 aaKnown RBP10.06□□□□□ -0.8
LIMS1-203ENST00000393310 GORABQ5T7V8 394 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 STRCQ7RTU9 1775 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 TNFAIP1Q13829 316 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 PKN2Q16513 984 aaKnown RBP10.06□□□□□ -0.8
LIMS1-203ENST00000393310 CCDC174Q6PII3 467 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 FAM9BQ8IZU0 186 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 GNL3LQ9NVN8 582 aaKnown RBP10.06□□□□□ -0.8
LIMS1-203ENST00000393310 ANKIB1Q9P2G1 1089 aa10.06□□□□□ -0.8
LIMS1-203ENST00000393310 TECPR2O15040 1411 aa10.05□□□□□ -0.8
LIMS1-203ENST00000393310 DPP8Q6V1X1 898 aaPredicted RBP10.05□□□□□ -0.8
LIMS1-203ENST00000393310 RTL1A6NKG5 1358 aa10.05□□□□□ -0.8
LIMS1-203ENST00000393310 TCERG1O14776 1098 aaKnown RBP10.05□□□□□ -0.8
LIMS1-203ENST00000393310 UBXN2AP68543 259 aa10.05□□□□□ -0.8
LIMS1-203ENST00000393310 DGKZQ13574 1117 aa10.05□□□□□ -0.8
LIMS1-203ENST00000393310 NIP7Q9Y221 180 aaKnown RBP eCLIP10.05□□□□□ -0.8
LIMS1-203ENST00000393310 ERBB3P21860 1342 aa10.05□□□□□ -0.8
LIMS1-203ENST00000393310 CIAPIN1Q6FI81 312 aa10.05□□□□□ -0.8
LIMS1-203ENST00000393310 DZIP3Q86Y13 1208 aaKnown RBP10.05□□□□□ -0.8
LIMS1-203ENST00000393310 ANKRD36BQ8N2N9 1353 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 SLF2Q8IX21 1173 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 KIF24Q5T7B8 1368 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 MYOM2P54296 1465 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 HOXC9P31274 260 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 SSR1P43307 286 aaKnown RBP10.04□□□□□ -0.8
LIMS1-203ENST00000393310 SUPT20HL1Q3ZLR7 823 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 ANP32CO43423 234 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 MPHOSPH8Q99549 860 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 SLC12A5Q9H2X9 1139 aa10.04□□□□□ -0.8
LIMS1-203ENST00000393310 SNRPA1P09661 255 aaKnown RBP10.03□□□□□ -0.8
LIMS1-203ENST00000393310 SULT6B1Q6IMI4 303 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 CDC37L1Q7L3B6 337 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 CDC42BPGQ6DT37 1551 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 BTBD11A6QL63 1104 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 ANAPC15P60006 121 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 ISY1Q9ULR0 285 aaKnown RBP10.03□□□□□ -0.8
LIMS1-203ENST00000393310 DPEP1P16444 411 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 EIF5P55010 431 aaKnown RBP10.03□□□□□ -0.8
LIMS1-203ENST00000393310 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
LIMS1-203ENST00000393310 KRI1Q8N9T8 703 aaKnown RBP10.03□□□□□ -0.8
LIMS1-203ENST00000393310 SLIT2O94813 1529 aa10.02□□□□□ -0.8
LIMS1-203ENST00000393310 GNAT3A8MTJ3 354 aa10.02□□□□□ -0.81
LIMS1-203ENST00000393310 CSADQ9Y600 493 aa10.02□□□□□ -0.81
LIMS1-203ENST00000393310 NRXN1Q9ULB1 1477 aa10.02□□□□□ -0.81
LIMS1-203ENST00000393310 GLTPD2A6NH11 291 aa10.02□□□□□ -0.81
LIMS1-203ENST00000393310 RBM26Q5T8P6 1007 aaKnown RBP10.02□□□□□ -0.81
LIMS1-203ENST00000393310 BRIP1Q9BX63 1249 aa10.02□□□□□ -0.81
LIMS1-203ENST00000393310 MYH16Q9H6N6 1097 aa10.02□□□□□ -0.81
LIMS1-203ENST00000393310 EDC4Q6P2E9 1401 aaKnown RBP10.02□□□□□ -0.81
LIMS1-203ENST00000393310 RRS1Q15050 365 aaKnown RBP10.02□□□□□ -0.81
LIMS1-203ENST00000393310 MPNDQ8N594 471 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms