RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 LRRCC1Q9C099 1032 aa28.56■■■□□ 2.16
VPS16-201ENST00000380443 LRRFIP2Q9Y608 721 aaKnown RBP28.56■■■□□ 2.16
VPS16-201ENST00000380443 ALDH1L1O75891 902 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 C16orf71Q8IYS4 520 aaPredicted RBP28.55■■■□□ 2.16
VPS16-201ENST00000380443 SSH3Q8TE77 659 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 SNX21Q969T3 373 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 DCAF5Q96JK2 942 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 IBTKQ9P2D0 1353 aaPredicted RBP28.55■■■□□ 2.16
VPS16-201ENST00000380443 PI4KAP2A4QPH2 592 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 PI4KAP1Q8N8J0 262 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 CABLES1Q8TDN4 633 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 PKD1L3Q7Z443 1732 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 MEGF6O75095 1541 aa28.55■■■□□ 2.16
VPS16-201ENST00000380443 MRC1P22897 1456 aa28.54■■■□□ 2.16
VPS16-201ENST00000380443 RAB11FIP3O75154 756 aa28.54■■■□□ 2.16
VPS16-201ENST00000380443 ADAMTS2O95450 1211 aa28.53■■■□□ 2.16
VPS16-201ENST00000380443 KDM6AO15550 1401 aaPredicted RBP28.53■■■□□ 2.16
VPS16-201ENST00000380443 SMARCA5O60264 1052 aaPredicted RBP28.53■■■□□ 2.16
VPS16-201ENST00000380443 ZNF790Q6PG37 636 aa28.53■■■□□ 2.16
VPS16-201ENST00000380443 KSR2Q6VAB6 950 aa28.53■■■□□ 2.16
VPS16-201ENST00000380443 DDX58O95786 925 aaKnown RBP28.52■■■□□ 2.16
VPS16-201ENST00000380443 NFKBIBQ15653 356 aa28.52■■■□□ 2.16
VPS16-201ENST00000380443 DDX21Q9NR30 783 aaKnown RBP eCLIP28.52■■■□□ 2.16
VPS16-201ENST00000380443 PNMA6EA0A0J9YXQ4 647 aa28.51■■■□□ 2.15
VPS16-201ENST00000380443 POLA2Q14181 598 aa28.51■■■□□ 2.15
VPS16-201ENST00000380443 ADCY9O60503 1353 aa28.51■■■□□ 2.15
VPS16-201ENST00000380443 HSCBQ8IWL3 235 aa28.5■■■□□ 2.15
VPS16-201ENST00000380443 AOX1Q06278 1338 aa28.5■■■□□ 2.15
VPS16-201ENST00000380443 PDE1AP54750 535 aa28.5■■■□□ 2.15
VPS16-201ENST00000380443 CHRNA2Q15822 529 aa28.5■■■□□ 2.15
VPS16-201ENST00000380443 SALL3Q9BXA9 1300 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 SDSP20132 328 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 HSP90AB4PQ58FF6 505 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 OTUD7AQ8TE49 926 aaPredicted RBP28.48■■■□□ 2.15
VPS16-201ENST00000380443 C8orf37Q96NL8 207 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 EXOC6BQ9Y2D4 811 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 ABCA3Q99758 1704 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 APBB1O00213 710 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 ANTXR1Q9H6X2 564 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 STAP2Q9UGK3 403 aa28.48■■■□□ 2.15
VPS16-201ENST00000380443 WDR17Q8IZU2 1322 aa28.47■■■□□ 2.15
VPS16-201ENST00000380443 NGLY1Q96IV0 654 aa28.46■■■□□ 2.15
VPS16-201ENST00000380443 PARP4Q9UKK3 1724 aaKnown RBP28.46■■■□□ 2.15
VPS16-201ENST00000380443 MTX1Q13505 466 aa28.46■■■□□ 2.15
VPS16-201ENST00000380443 PRDM11Q9NQV5 511 aa28.46■■■□□ 2.15
VPS16-201ENST00000380443 PPP1R42Q7Z4L9 355 aa28.45■■■□□ 2.14
VPS16-201ENST00000380443 MAP3K2Q9Y2U5 619 aa28.45■■■□□ 2.14
VPS16-201ENST00000380443 CYP27B1O15528 508 aa28.44■■■□□ 2.14
VPS16-201ENST00000380443 NFATC2IPQ8NCF5 419 aa28.44■■■□□ 2.14
VPS16-201ENST00000380443 LINS1Q8NG48 757 aa28.44■■■□□ 2.14
VPS16-201ENST00000380443 MX1P20591 662 aa28.43■■■□□ 2.14
VPS16-201ENST00000380443 TTC5Q8N0Z6 440 aa28.43■■■□□ 2.14
VPS16-201ENST00000380443 REC8O95072 547 aa28.42■■■□□ 2.14
VPS16-201ENST00000380443 ZNF772Q68DY9 489 aaPredicted RBP28.42■■■□□ 2.14
VPS16-201ENST00000380443 ANXA1P04083 346 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 SNRPA1P09661 255 aaKnown RBP28.41■■■□□ 2.14
VPS16-201ENST00000380443 UTYO14607 1347 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 AFF2P51816 1311 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 NBPF7P0C2Y1 421 aaPredicted RBP28.41■■■□□ 2.14
VPS16-201ENST00000380443 PDIA6Q15084 440 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 KIF1BPQ96EK5 621 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 FMNL2Q96PY5 1086 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 KIF2CQ99661 725 aa28.41■■■□□ 2.14
VPS16-201ENST00000380443 SRGAP3O43295 1099 aa28.4■■■□□ 2.14
VPS16-201ENST00000380443 PROSER3Q2NL68 480 aa28.4■■■□□ 2.14
VPS16-201ENST00000380443 LARP1Q6PKG0 1096 aaKnown RBP28.4■■■□□ 2.14
VPS16-201ENST00000380443 C9orf78Q9NZ63 289 aaPredicted RBP28.4■■■□□ 2.14
VPS16-201ENST00000380443 PCDH11XQ9BZA7 1347 aa28.4■■■□□ 2.14
VPS16-201ENST00000380443 PCDH11YQ9BZA8 1340 aa28.4■■■□□ 2.14
VPS16-201ENST00000380443 USP26Q9BXU7 913 aa28.39■■■□□ 2.14
VPS16-201ENST00000380443 SURF6O75683 361 aaKnown RBP28.39■■■□□ 2.13
VPS16-201ENST00000380443 CABP4P57796 275 aa28.39■■■□□ 2.13
VPS16-201ENST00000380443 CARD10Q9BWT7 1032 aa28.39■■■□□ 2.13
VPS16-201ENST00000380443 COL5A2P05997 1499 aaPredicted RBP28.38■■■□□ 2.13
VPS16-201ENST00000380443 FNBP4Q8N3X1 1017 aaPredicted RBP28.38■■■□□ 2.13
VPS16-201ENST00000380443 SLKQ9H2G2 1235 aaPredicted RBP28.38■■■□□ 2.13
VPS16-201ENST00000380443 ERC2O15083 957 aa28.37■■■□□ 2.13
VPS16-201ENST00000380443 DEKP35659 375 aaKnown RBP28.37■■■□□ 2.13
VPS16-201ENST00000380443 SLC39A6Q13433 755 aa28.37■■■□□ 2.13
VPS16-201ENST00000380443 RABEP1Q15276 862 aa28.37■■■□□ 2.13
VPS16-201ENST00000380443 TOM1L2Q6ZVM7 507 aa28.37■■■□□ 2.13
VPS16-201ENST00000380443 CHMP5Q9NZZ3 219 aa28.37■■■□□ 2.13
VPS16-201ENST00000380443 RGS17Q9UGC6 210 aaPredicted RBP28.37■■■□□ 2.13
VPS16-201ENST00000380443 PRAMEF22A3QJZ6 481 aa28.36■■■□□ 2.13
VPS16-201ENST00000380443 ZCRB1Q8TBF4 217 aaKnown RBP28.36■■■□□ 2.13
VPS16-201ENST00000380443 ERVV-2B6SEH9 535 aa28.36■■■□□ 2.13
VPS16-201ENST00000380443 RHPN1Q8TCX5 695 aa28.36■■■□□ 2.13
VPS16-201ENST00000380443 ZNF496Q96IT1 587 aaPredicted RBP28.36■■■□□ 2.13
VPS16-201ENST00000380443 C5P01031 1676 aa28.36■■■□□ 2.13
VPS16-201ENST00000380443 NEXNQ0ZGT2 675 aa28.35■■■□□ 2.13
VPS16-201ENST00000380443 NKX1-1Q15270 411 aaPredicted RBP28.35■■■□□ 2.13
VPS16-201ENST00000380443 ERBB4Q15303 1308 aa28.35■■■□□ 2.13
VPS16-201ENST00000380443 ERC1Q8IUD2 1116 aa28.34■■■□□ 2.13
VPS16-201ENST00000380443 USP21Q9UK80 565 aa28.34■■■□□ 2.13
VPS16-201ENST00000380443 TUBGCP6Q96RT7 1819 aa28.34■■■□□ 2.13
VPS16-201ENST00000380443 GRM8O00222 908 aa28.34■■■□□ 2.13
VPS16-201ENST00000380443 EPB41L2O43491 1005 aaKnown RBP28.33■■■□□ 2.13
VPS16-201ENST00000380443 RIC3Q7Z5B4 369 aa28.33■■■□□ 2.13
VPS16-201ENST00000380443 BCL11AQ9H165 835 aa28.33■■■□□ 2.13
VPS16-201ENST00000380443 IL2RBP14784 551 aa28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms