RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 NBPF7P0C2Y1 421 aaPredicted RBP23.81■■□□□ 1.4
SHROOM1-202ENST00000378676 SURF6O75683 361 aaKnown RBP23.8■■□□□ 1.4
SHROOM1-202ENST00000378676 MCCP23508 829 aa23.79■■□□□ 1.4
SHROOM1-202ENST00000378676 ESCO1Q5FWF5 840 aa23.79■■□□□ 1.4
SHROOM1-202ENST00000378676 SIPA1L3O60292 1781 aaPredicted RBP23.79■■□□□ 1.4
SHROOM1-202ENST00000378676 ADCY9O60503 1353 aa23.79■■□□□ 1.4
SHROOM1-202ENST00000378676 MAP4K4O95819 1239 aaPredicted RBP23.79■■□□□ 1.4
SHROOM1-202ENST00000378676 BEND3Q5T5X7 828 aa23.79■■□□□ 1.4
SHROOM1-202ENST00000378676 PI4KAP2A4QPH2 592 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 ZNF530Q6P9A1 599 aaPredicted RBP23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 PI4KAP1Q8N8J0 262 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 RHPN1Q8TCX5 695 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 DNAAF4Q8WXU2 420 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 ERBB4Q15303 1308 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 RGPD5Q99666 1765 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 SRGAP3O43295 1099 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 HOXB7P09629 217 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 PSME1Q06323 249 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 CAVIN1Q6NZI2 390 aaKnown RBP23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 NOL8Q76FK4 1167 aaKnown RBP23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 PI4K2BQ8TCG2 481 aa23.78■■□□□ 1.4
SHROOM1-202ENST00000378676 RAB11FIP3O75154 756 aa23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 ANAPC15P60006 121 aa23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 MPRIPQ6WCQ1 1025 aa23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 CAMTA1Q9Y6Y1 1673 aa23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 NCLP19338 710 aaKnown RBP23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 FOXD4L5Q5VV16 416 aaPredicted RBP23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 FOXD4L4Q8WXT5 416 aaPredicted RBP23.77■■□□□ 1.4
SHROOM1-202ENST00000378676 SLIT3O75094 1523 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 CUL4AQ13619 759 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 AKAP4Q5JQC9 854 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 BTBD11A6QL63 1104 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 PRPF40AO75400 957 aaKnown RBP23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 TEFQ10587 303 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 KCNH5Q8NCM2 988 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 GPT2Q8TD30 523 aa23.76■■□□□ 1.39
SHROOM1-202ENST00000378676 PLEKHG5O94827 1062 aa23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 CLCN1P35523 988 aa23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 MCM2P49736 904 aa23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 IL17RAQ96F46 866 aa23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 UPF3BQ9BZI7 483 aaKnown RBP23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 NPHP4O75161 1426 aaPredicted RBP23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 NCAPD2Q15021 1401 aa23.75■■□□□ 1.39
SHROOM1-202ENST00000378676 ZNF445P59923 1031 aa23.74■■□□□ 1.39
SHROOM1-202ENST00000378676 ZSCAN23Q3MJ62 389 aa23.74■■□□□ 1.39
SHROOM1-202ENST00000378676 TRPM3Q9HCF6 1732 aaPredicted RBP23.74■■□□□ 1.39
SHROOM1-202ENST00000378676 XPCQ01831 940 aaPredicted RBP23.73■■□□□ 1.39
SHROOM1-202ENST00000378676 NASPP49321 788 aaPredicted RBP23.73■■□□□ 1.39
SHROOM1-202ENST00000378676 KIF1BPQ96EK5 621 aa23.73■■□□□ 1.39
SHROOM1-202ENST00000378676 RBM27Q9P2N5 1060 aaKnown RBP23.73■■□□□ 1.39
SHROOM1-202ENST00000378676 PLEKHO1Q53GL0 409 aaPredicted RBP23.72■■□□□ 1.39
SHROOM1-202ENST00000378676 RNMTO43148 476 aaKnown RBP23.71■■□□□ 1.39
SHROOM1-202ENST00000378676 HSPA4P34932 840 aa23.71■■□□□ 1.39
SHROOM1-202ENST00000378676 ESPNB1AK53 854 aa23.71■■□□□ 1.39
SHROOM1-202ENST00000378676 BRD1O95696 1058 aa23.71■■□□□ 1.39
SHROOM1-202ENST00000378676 TCHHQ07283 1943 aa23.71■■□□□ 1.39
SHROOM1-202ENST00000378676 PROSER3Q2NL68 480 aa23.7■■□□□ 1.38
SHROOM1-202ENST00000378676 ORAI2Q96SN7 254 aa23.7■■□□□ 1.38
SHROOM1-202ENST00000378676 NSFL1CQ9UNZ2 370 aaKnown RBP23.7■■□□□ 1.38
SHROOM1-202ENST00000378676 ADAMTS7Q9UKP4 1686 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 GCP02774 474 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 ARHGEF25Q86VW2 580 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 PRAMEF22A3QJZ6 481 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 SGSM2O43147 1006 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 RAD50Q92878 1312 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 OVOS2A0A0G2JMS6 1433 aa23.69■■□□□ 1.38
SHROOM1-202ENST00000378676 C5P01031 1676 aa23.68■■□□□ 1.38
SHROOM1-202ENST00000378676 TRIM44Q96DX7 344 aaPredicted RBP23.68■■□□□ 1.38
SHROOM1-202ENST00000378676 INTS4Q96HW7 963 aaKnown RBP23.68■■□□□ 1.38
SHROOM1-202ENST00000378676 CCDC173Q0VFZ6 552 aa23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 PPP1R9BQ96SB3 815 aa23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 DBF4Q9UBU7 674 aaPredicted RBP23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 C1orf141Q5JVX7 400 aa23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 ANKRD24Q8TF21 1146 aa23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 MAP3K2Q9Y2U5 619 aa23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 HEG1Q9ULI3 1381 aa23.67■■□□□ 1.38
SHROOM1-202ENST00000378676 EPB41L2O43491 1005 aaKnown RBP23.66■■□□□ 1.38
SHROOM1-202ENST00000378676 AMOTQ4VCS5 1084 aa23.66■■□□□ 1.38
SHROOM1-202ENST00000378676 TMEM63CQ9P1W3 806 aa23.66■■□□□ 1.38
SHROOM1-202ENST00000378676 USP42Q9H9J4 1324 aaKnown RBP23.66■■□□□ 1.38
SHROOM1-202ENST00000378676 CNTROBQ8N137 903 aa23.66■■□□□ 1.38
SHROOM1-202ENST00000378676 LSG1Q9H089 658 aaKnown RBP23.66■■□□□ 1.38
SHROOM1-202ENST00000378676 GIGYF1O75420 1035 aaPredicted RBP23.65■■□□□ 1.38
SHROOM1-202ENST00000378676 MTX1Q13505 466 aa23.65■■□□□ 1.38
SHROOM1-202ENST00000378676 RBSNQ9H1K0 784 aa23.65■■□□□ 1.38
SHROOM1-202ENST00000378676 CHMP4AQ9BY43 222 aa23.65■■□□□ 1.38
SHROOM1-202ENST00000378676 SNX14Q9Y5W7 946 aa23.65■■□□□ 1.38
SHROOM1-202ENST00000378676 PRIM1P49642 420 aaKnown RBP23.64■■□□□ 1.38
SHROOM1-202ENST00000378676 OS9Q13438 667 aaPredicted RBP23.64■■□□□ 1.38
SHROOM1-202ENST00000378676 CWF19L2Q2TBE0 894 aaKnown RBP23.64■■□□□ 1.37
SHROOM1-202ENST00000378676 HSP90AB4PQ58FF6 505 aa23.64■■□□□ 1.37
SHROOM1-202ENST00000378676 AXIN2Q9Y2T1 843 aa23.64■■□□□ 1.37
SHROOM1-202ENST00000378676 SCN11AQ9UI33 1791 aa23.63■■□□□ 1.37
SHROOM1-202ENST00000378676 LMOD2Q6P5Q4 547 aa23.63■■□□□ 1.37
SHROOM1-202ENST00000378676 PA2G4Q9UQ80 394 aaKnown RBP23.63■■□□□ 1.37
SHROOM1-202ENST00000378676 RASEFQ8IZ41 740 aa23.63■■□□□ 1.37
SHROOM1-202ENST00000378676 CWC27Q6UX04 472 aaKnown RBP23.62■■□□□ 1.37
SHROOM1-202ENST00000378676 TTC41PQ6P2S7 1318 aa23.62■■□□□ 1.37
SHROOM1-202ENST00000378676 ALDH1L1O75891 902 aa23.62■■□□□ 1.37
SHROOM1-202ENST00000378676 KSR2Q6VAB6 950 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms