RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 TACO1Q9BSH4 297 aaKnown RBP13.73□□□□□ -0.21
NPHP4-202ENST00000378161 KIF14Q15058 1648 aa13.73□□□□□ -0.21
NPHP4-202ENST00000378161 URI1O94763 535 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-202ENST00000378161 PEX19P40855 299 aa13.73□□□□□ -0.21
NPHP4-202ENST00000378161 TSR2Q969E8 191 aaKnown RBP13.73□□□□□ -0.21
NPHP4-202ENST00000378161 DISP3Q9P2K9 1392 aa13.73□□□□□ -0.21
NPHP4-202ENST00000378161 DBN1Q16643 649 aa13.72□□□□□ -0.21
NPHP4-202ENST00000378161 RSRC1Q96IZ7 334 aaKnown RBP13.72□□□□□ -0.21
NPHP4-202ENST00000378161 EIF3CLB5ME19 914 aaKnown RBP13.72□□□□□ -0.21
NPHP4-202ENST00000378161 RARSP54136 660 aaKnown RBP13.72□□□□□ -0.21
NPHP4-202ENST00000378161 MRFAP1L1Q96HT8 127 aa13.72□□□□□ -0.21
NPHP4-202ENST00000378161 EIF3CQ99613 913 aaKnown RBP13.72□□□□□ -0.21
NPHP4-202ENST00000378161 ENOX2Q16206 610 aaKnown RBP13.72□□□□□ -0.21
NPHP4-202ENST00000378161 N4BP2L2Q92802 583 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-202ENST00000378161 LMBRD1Q9NUN5 540 aa13.72□□□□□ -0.21
NPHP4-202ENST00000378161 GOLGA6L7A0A1B0GV03 622 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 SNW1Q13573 536 aaKnown RBP13.71□□□□□ -0.21
NPHP4-202ENST00000378161 SMC1AQ14683 1233 aaKnown RBP13.71□□□□□ -0.21
NPHP4-202ENST00000378161 ARMC2Q8NEN0 867 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 KIAA1524Q8TCG1 905 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 BSDC1Q9NW68 430 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-202ENST00000378161 RAD50Q92878 1312 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 MICALCLQ6ZW33 695 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 GPATCH3Q96I76 525 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 GBP3Q9H0R5 595 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 CLIP2Q9UDT6 1046 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 RILPL2Q969X0 211 aa13.71□□□□□ -0.21
NPHP4-202ENST00000378161 NAT10Q9H0A0 1025 aaKnown RBP13.71□□□□□ -0.21
NPHP4-202ENST00000378161 NOB1Q9ULX3 412 aaKnown RBP13.71□□□□□ -0.21
NPHP4-202ENST00000378161 TTC19Q6DKK2 380 aaPredicted RBP13.71□□□□□ -0.22
NPHP4-202ENST00000378161 NBPF10Q6P3W6 841 aaKnown RBP13.71□□□□□ -0.22
NPHP4-202ENST00000378161 SMARCC1Q92922 1105 aaPredicted RBP13.71□□□□□ -0.22
NPHP4-202ENST00000378161 SGSM3Q96HU1 749 aa13.71□□□□□ -0.22
NPHP4-202ENST00000378161 JPH2Q9BR39 696 aaPredicted RBP13.71□□□□□ -0.22
NPHP4-202ENST00000378161 SPTLC3Q9NUV7 552 aa13.71□□□□□ -0.22
NPHP4-202ENST00000378161 POLKQ9UBT6 870 aa13.71□□□□□ -0.22
NPHP4-202ENST00000378161 INPP5BP32019 993 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 DHX8Q14562 1220 aaKnown RBP13.7□□□□□ -0.22
NPHP4-202ENST00000378161 ODF2LQ9ULJ1 636 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 USP19O94966 1318 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 POLD1P28340 1107 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 GAS2L2Q8NHY3 880 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 RUFY1Q96T51 708 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 ANAPC4Q9UJX5 808 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 TEX14Q8IWB6 1497 aa13.7□□□□□ -0.22
NPHP4-202ENST00000378161 EXOC4Q96A65 974 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 CTIFO43310 598 aaKnown RBP13.69□□□□□ -0.22
NPHP4-202ENST00000378161 FIBPO43427 364 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 MEX3CQ5U5Q3 659 aaKnown RBP13.69□□□□□ -0.22
NPHP4-202ENST00000378161 FBXO38Q6PIJ6 1188 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 ZNF428Q96B54 188 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.69□□□□□ -0.22
NPHP4-202ENST00000378161 HMOX1P09601 288 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 MCM6Q14566 821 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 JMYQ8N9B5 988 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 TMEM63CQ9P1W3 806 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 NUP153P49790 1475 aaKnown RBP13.69□□□□□ -0.22
NPHP4-202ENST00000378161 AMPHP49418 695 aa13.69□□□□□ -0.22
NPHP4-202ENST00000378161 WDR33Q9C0J8 1336 aaKnown RBP13.69□□□□□ -0.22
NPHP4-202ENST00000378161 MCM2P49736 904 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 GNL3LQ9NVN8 582 aaKnown RBP13.68□□□□□ -0.22
NPHP4-202ENST00000378161 ARHGEF12Q9NZN5 1544 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 LIG3P49916 1009 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 RWDD2BP57060 319 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 TRAF1Q13077 416 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 KMT5BQ4FZB7 885 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 RNF187Q5TA31 235 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-202ENST00000378161 NAIF1Q69YI7 327 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-202ENST00000378161 TADA2BQ86TJ2 420 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 SRRTQ9BXP5 876 aaKnown RBP13.68□□□□□ -0.22
NPHP4-202ENST00000378161 PYCARDQ9ULZ3 195 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 PRAG1Q86YV5 1406 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 NSD3Q9BZ95 1437 aa13.68□□□□□ -0.22
NPHP4-202ENST00000378161 PRKAR2BP31323 418 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 CTCFLQ8NI51 663 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-202ENST00000378161 SCAF11Q99590 1463 aaKnown RBP13.67□□□□□ -0.22
NPHP4-202ENST00000378161 LRRCC1Q9C099 1032 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 CAND2O75155 1236 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 LUZP1Q86V48 1076 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 CRACR2AQ9BSW2 395 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 CHD1LQ86WJ1 897 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 ST7Q9NRC1 585 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 A0A0G2JS52 829 aa13.67□□□□□ -0.22
NPHP4-202ENST00000378161 PER1O15534 1290 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-202ENST00000378161 PRPF38AQ8NAV1 312 aaKnown RBP13.67□□□□□ -0.22
NPHP4-202ENST00000378161 CCDC70Q6NSX1 233 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 CEP112Q8N8E3 955 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 ANO2Q9NQ90 1003 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 UHRF1BP1Q6BDS2 1440 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 GPRASP1Q5JY77 1395 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 NUTM2FA1L443 756 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 PDCD2Q16342 344 aaPredicted RBP13.66□□□□□ -0.22
NPHP4-202ENST00000378161 SLFNL1Q499Z3 407 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 PZPP20742 1482 aa13.66□□□□□ -0.22
NPHP4-202ENST00000378161 RPGRIP1LQ68CZ1 1315 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 PNMA6AP0CW24 399 aaPredicted RBP13.65□□□□□ -0.22
NPHP4-202ENST00000378161 SKILP12757 684 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 DCTN1Q14203 1278 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 TEX11Q8IYF3 940 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 NGDNQ8NEJ9 315 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms