RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 STARD3NLO95772 234 aa28.17■■■□□ 2.1
VSX1-201ENST00000376707 PHACTR3Q96KR7 559 aa28.17■■■□□ 2.1
VSX1-201ENST00000376707 RSPH6AQ9H0K4 717 aa28.17■■■□□ 2.1
VSX1-201ENST00000376707 FCHSD2O94868 740 aa28.16■■■□□ 2.1
VSX1-201ENST00000376707 TM4SF1P30408 202 aa28.16■■■□□ 2.1
VSX1-201ENST00000376707 ZNF790Q6PG37 636 aa28.16■■■□□ 2.1
VSX1-201ENST00000376707 ZNF526Q8TF50 670 aaPredicted RBP28.16■■■□□ 2.1
VSX1-201ENST00000376707 NARFQ9UHQ1 456 aa28.16■■■□□ 2.1
VSX1-201ENST00000376707 POLRMTO00411 1230 aaKnown RBP28.15■■■□□ 2.1
VSX1-201ENST00000376707 U2AF1L5P0DN76 240 aaPredicted RBP28.15■■■□□ 2.1
VSX1-201ENST00000376707 CANXP27824 592 aaKnown RBP28.15■■■□□ 2.1
VSX1-201ENST00000376707 U2AF1Q01081 240 aaKnown RBP eCLIP28.15■■■□□ 2.1
VSX1-201ENST00000376707 UBR2Q8IWV8 1755 aa28.14■■■□□ 2.1
VSX1-201ENST00000376707 ZNF496Q96IT1 587 aaPredicted RBP28.14■■■□□ 2.1
VSX1-201ENST00000376707 ARHGAP27Q6ZUM4 889 aa28.13■■■□□ 2.09
VSX1-201ENST00000376707 PIM2Q9P1W9 311 aa28.13■■■□□ 2.09
VSX1-201ENST00000376707 HEG1Q9ULI3 1381 aa28.12■■■□□ 2.09
VSX1-201ENST00000376707 KCNA3P22001 575 aa28.12■■■□□ 2.09
VSX1-201ENST00000376707 TEX13AQ9BXU3 409 aaPredicted RBP28.12■■■□□ 2.09
VSX1-201ENST00000376707 CEMIPQ8WUJ3 1361 aa28.11■■■□□ 2.09
VSX1-201ENST00000376707 NFIXQ14938 502 aa28.1■■■□□ 2.09
VSX1-201ENST00000376707 FMNL2Q96PY5 1086 aa28.1■■■□□ 2.09
VSX1-201ENST00000376707 A0A087WZG4 1122 aa28.08■■■□□ 2.09
VSX1-201ENST00000376707 BTBD11A6QL63 1104 aa28.08■■■□□ 2.09
VSX1-201ENST00000376707 DALRD3Q5D0E6 543 aaKnown RBP28.08■■■□□ 2.09
VSX1-201ENST00000376707 RTF1Q92541 710 aaKnown RBP28.08■■■□□ 2.09
VSX1-201ENST00000376707 BCL2L12Q9HB09 334 aa28.08■■■□□ 2.09
VSX1-201ENST00000376707 CHRNA5P30532 468 aa28.07■■■□□ 2.08
VSX1-201ENST00000376707 EIF5P55010 431 aaKnown RBP28.07■■■□□ 2.08
VSX1-201ENST00000376707 SIPA1L3O60292 1781 aaPredicted RBP28.06■■■□□ 2.08
VSX1-201ENST00000376707 ZNF330Q9Y3S2 320 aaPredicted RBP28.06■■■□□ 2.08
VSX1-201ENST00000376707 BRCA1P38398 1863 aaKnown RBP28.04■■■□□ 2.08
VSX1-201ENST00000376707 SERPINB2P05120 415 aa28.04■■■□□ 2.08
VSX1-201ENST00000376707 KCNQ3O43525 872 aa28.03■■■□□ 2.08
VSX1-201ENST00000376707 MCM10Q7L590 875 aa28.03■■■□□ 2.08
VSX1-201ENST00000376707 NPM2Q86SE8 214 aaKnown RBP28.03■■■□□ 2.08
VSX1-201ENST00000376707 IL6STP40189 918 aaPredicted RBP28.02■■■□□ 2.08
VSX1-201ENST00000376707 BICDL1Q6ZP65 573 aa28.02■■■□□ 2.08
VSX1-201ENST00000376707 A1BGP04217 495 aa28.01■■■□□ 2.07
VSX1-201ENST00000376707 TBC1D2BQ9UPU7 963 aa28■■■□□ 2.07
VSX1-201ENST00000376707 HTATSF1O43719 755 aaKnown RBP27.99■■■□□ 2.07
VSX1-201ENST00000376707 ARFGEF1Q9Y6D6 1849 aa27.99■■■□□ 2.07
VSX1-201ENST00000376707 NEFMP07197 916 aa27.98■■■□□ 2.07
VSX1-201ENST00000376707 DCTN1Q14203 1278 aa27.98■■■□□ 2.07
VSX1-201ENST00000376707 C9orf131Q5VYM1 1079 aa27.98■■■□□ 2.07
VSX1-201ENST00000376707 NRXN2Q9P2S2 1712 aa27.98■■■□□ 2.07
VSX1-201ENST00000376707 TBC1D9BQ66K14 1250 aa27.97■■■□□ 2.07
VSX1-201ENST00000376707 AFDNP55196 1824 aaKnown RBP27.97■■■□□ 2.07
VSX1-201ENST00000376707 KIF3CO14782 793 aa27.96■■■□□ 2.07
VSX1-201ENST00000376707 USP16Q9Y5T5 823 aa27.96■■■□□ 2.07
VSX1-201ENST00000376707 SNRPA1P09661 255 aaKnown RBP27.95■■■□□ 2.06
VSX1-201ENST00000376707 C2CD5Q86YS7 1000 aa27.95■■■□□ 2.06
VSX1-201ENST00000376707 CARMIL3Q8ND23 1372 aa27.94■■■□□ 2.06
VSX1-201ENST00000376707 SCN7AQ01118 1682 aa27.94■■■□□ 2.06
VSX1-201ENST00000376707 H0YIN7 160 aa27.93■■■□□ 2.06
VSX1-201ENST00000376707 RNF181Q9P0P0 153 aa27.93■■■□□ 2.06
VSX1-201ENST00000376707 PRAMEF22A3QJZ6 481 aa27.92■■■□□ 2.06
VSX1-201ENST00000376707 CAMTA2O94983 1202 aa27.92■■■□□ 2.06
VSX1-201ENST00000376707 DZIP3Q86Y13 1208 aaKnown RBP27.92■■■□□ 2.06
VSX1-201ENST00000376707 TTLL6Q8N841 843 aa27.92■■■□□ 2.06
VSX1-201ENST00000376707 PIP4K2AP48426 406 aaPredicted RBP27.91■■■□□ 2.06
VSX1-201ENST00000376707 TAF7Q15545 349 aaPredicted RBP27.91■■■□□ 2.06
VSX1-201ENST00000376707 SETDB2Q96T68 719 aa27.9■■■□□ 2.06
VSX1-201ENST00000376707 NPHP1O15259 732 aa27.89■■■□□ 2.06
VSX1-201ENST00000376707 HSPA6P17066 643 aa27.89■■■□□ 2.06
VSX1-201ENST00000376707 PRR5LQ6MZQ0 368 aa27.89■■■□□ 2.06
VSX1-201ENST00000376707 PDE6BP35913 854 aa27.88■■■□□ 2.05
VSX1-201ENST00000376707 BRIP1Q9BX63 1249 aa27.88■■■□□ 2.05
VSX1-201ENST00000376707 NMRK2Q9NPI5 230 aa27.88■■■□□ 2.05
VSX1-201ENST00000376707 PDZRN3Q9UPQ7 1066 aa27.88■■■□□ 2.05
VSX1-201ENST00000376707 CCDC24Q8N4L8 307 aa27.87■■■□□ 2.05
VSX1-201ENST00000376707 PNNQ9H307 717 aaKnown RBP27.87■■■□□ 2.05
VSX1-201ENST00000376707 RASSF7Q02833 373 aa27.86■■■□□ 2.05
VSX1-201ENST00000376707 CNBD1Q8NA66 436 aa27.86■■■□□ 2.05
VSX1-201ENST00000376707 ZNF622Q969S3 477 aaKnown RBP eCLIP27.86■■■□□ 2.05
VSX1-201ENST00000376707 PLEKHF1Q96S99 279 aa27.86■■■□□ 2.05
VSX1-201ENST00000376707 MIS18AQ9NYP9 233 aa27.86■■■□□ 2.05
VSX1-201ENST00000376707 DLEC1Q9Y238 1755 aa27.86■■■□□ 2.05
VSX1-201ENST00000376707 TOMM70O94826 608 aa27.85■■■□□ 2.05
VSX1-201ENST00000376707 PNISRQ8TF01 805 aaKnown RBP27.85■■■□□ 2.05
VSX1-201ENST00000376707 ZNF652Q9Y2D9 606 aa27.85■■■□□ 2.05
VSX1-201ENST00000376707 KDM2BQ8NHM5 1336 aa27.85■■■□□ 2.05
VSX1-201ENST00000376707 MAPK8IP3Q9UPT6 1336 aa27.85■■■□□ 2.05
VSX1-201ENST00000376707 ST5P78524 1137 aa27.84■■■□□ 2.05
VSX1-201ENST00000376707 NFE2L2Q16236 605 aa27.84■■■□□ 2.05
VSX1-201ENST00000376707 CLEC4GQ6UXB4 293 aa27.83■■■□□ 2.05
VSX1-201ENST00000376707 BCORQ6W2J9 1755 aa27.82■■■□□ 2.04
VSX1-201ENST00000376707 NBPF26B4DH59 902 aa27.82■■■□□ 2.04
VSX1-201ENST00000376707 LMNB1P20700 586 aa27.82■■■□□ 2.04
VSX1-201ENST00000376707 NBPF10Q6P3W6 841 aaKnown RBP27.82■■■□□ 2.04
VSX1-201ENST00000376707 NBPF15Q8N660 670 aa27.82■■■□□ 2.04
VSX1-201ENST00000376707 RALBP1Q15311 655 aa27.81■■■□□ 2.04
VSX1-201ENST00000376707 C16orf71Q8IYS4 520 aaPredicted RBP27.81■■■□□ 2.04
VSX1-201ENST00000376707 ANKRD31Q8N7Z5 1873 aa27.8■■■□□ 2.04
VSX1-201ENST00000376707 ZC3H4Q9UPT8 1303 aaKnown RBP27.79■■■□□ 2.04
VSX1-201ENST00000376707 NBPF5PQ86XG9 351 aaPredicted RBP27.79■■■□□ 2.04
VSX1-201ENST00000376707 THUMPD2Q9BTF0 503 aaKnown RBP27.79■■■□□ 2.04
VSX1-201ENST00000376707 ZNF219Q9P2Y4 722 aaPredicted RBP27.78■■■□□ 2.04
VSX1-201ENST00000376707 NFKBIEO00221 500 aa27.77■■■□□ 2.04
VSX1-201ENST00000376707 C21orf2O43822 256 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms