RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 HCLS1P14317 486 aaPredicted RBP7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CEP85Q6P2H3 762 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 LIMCH1Q9UPQ0 1083 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 KIF6Q6ZMV9 814 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 PPP1R42Q7Z4L9 355 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CCDC61Q9Y6R9 512 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CCT2P78371 535 aaKnown RBP7.73□□□□□ -1.17
SMC1A-202ENST00000375340 GPS2Q13227 327 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 CAGE1Q8TC20 777 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 PPP6R1Q9UPN7 881 aa7.73□□□□□ -1.17
SMC1A-202ENST00000375340 NAP1L1P55209 391 aaKnown RBP7.72□□□□□ -1.17
SMC1A-202ENST00000375340 ESYT1Q9BSJ8 1104 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 TRMT1Q9NXH9 659 aaKnown RBP7.72□□□□□ -1.17
SMC1A-202ENST00000375340 RIMS2Q9UQ26 1411 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 TFIP11Q9UBB9 837 aaKnown RBP7.72□□□□□ -1.17
SMC1A-202ENST00000375340 IQGAP3Q86VI3 1631 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 PDE1AP54750 535 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 USP26Q9BXU7 913 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 ZNF518AQ6AHZ1 1483 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 STRN4Q9NRL3 753 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 CHPF2Q9P2E5 772 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 NPATQ14207 1427 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 PIBF1Q8WXW3 757 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 CNNM1Q9NRU3 951 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 DHX16O60231 1041 aaKnown RBP7.72□□□□□ -1.17
SMC1A-202ENST00000375340 HSP90AB2PQ58FF8 381 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 CCDC158Q5M9N0 1113 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 RBSNQ9H1K0 784 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 POLKQ9UBT6 870 aa7.72□□□□□ -1.17
SMC1A-202ENST00000375340 EIF4A2Q14240 407 aaKnown RBP7.71□□□□□ -1.17
SMC1A-202ENST00000375340 DNAAF4Q8WXU2 420 aa7.71□□□□□ -1.17
SMC1A-202ENST00000375340 TCEANC2Q96MN5 208 aa7.71□□□□□ -1.17
SMC1A-202ENST00000375340 ACEP12821 1306 aa7.71□□□□□ -1.17
SMC1A-202ENST00000375340 PATL2C9JE40 543 aaKnown RBP7.71□□□□□ -1.17
SMC1A-202ENST00000375340 ATF3P18847 181 aa7.71□□□□□ -1.17
SMC1A-202ENST00000375340 VAMP4O75379 141 aa7.71□□□□□ -1.17
SMC1A-202ENST00000375340 NUP133Q8WUM0 1156 aa7.71□□□□□ -1.17
SMC1A-202ENST00000375340 ERVK-7P63135 1459 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 ZSCAN22P10073 491 aaPredicted RBP7.71□□□□□ -1.18
SMC1A-202ENST00000375340 ANKRD20A12PQ8NF67 263 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 ZFYVE9O95405 1425 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 LRRC2Q9BYS8 371 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 TRPM2O94759 1503 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 ATP10AO60312 1499 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 C17orf53Q8N3J3 647 aaPredicted RBP7.71□□□□□ -1.18
SMC1A-202ENST00000375340 ANKRD44Q8N8A2 993 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 ZMYND15Q9H091 742 aa7.71□□□□□ -1.18
SMC1A-202ENST00000375340 CCDC69A6NI79 296 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 CPA1P15085 419 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 TATP17735 454 aaPredicted RBP7.7□□□□□ -1.18
SMC1A-202ENST00000375340 ISM2Q6H9L7 571 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 CCDC70Q6NSX1 233 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 GLRX3O76003 335 aaKnown RBP7.7□□□□□ -1.18
SMC1A-202ENST00000375340 ZBTB7BO15156 539 aaPredicted RBP7.7□□□□□ -1.18
SMC1A-202ENST00000375340 ARHGAP45Q92619 1136 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 PIK3R4Q99570 1358 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 BIN1O00499 593 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 DNM1Q05193 864 aaKnown RBP7.7□□□□□ -1.18
SMC1A-202ENST00000375340 CCAR1Q8IX12 1150 aaKnown RBP7.7□□□□□ -1.18
SMC1A-202ENST00000375340 CEP57L1Q8IYX8 460 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 CEP152O94986 1710 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 CCDC144CPQ8IYA2 1237 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 PDCL3Q9H2J4 239 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 PTPRTO14522 1441 aa7.7□□□□□ -1.18
SMC1A-202ENST00000375340 ANO6Q4KMQ2 910 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 SH2B1Q9NRF2 756 aaPredicted RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 CFAP45Q9UL16 551 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 TBC1D2BQ9UPU7 963 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 PIP4K2AP48426 406 aaPredicted RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.69□□□□□ -1.181e-6■■■□□ 15.1
SMC1A-202ENST00000375340 MADDQ8WXG6 1647 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 G3V3G9 751 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 DCAF8Q5TAQ9 597 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 MTHFSDQ2M296 383 aaKnown RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 G2E3Q7L622 706 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 ZC3H6P61129 1189 aaKnown RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 UBE2HP62256 183 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 CHAMP1Q96JM3 812 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 BRMS1Q9HCU9 246 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 PA2G4Q9UQ80 394 aaKnown RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 YTHDC2Q9H6S0 1430 aaKnown RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 TNNT1P13805 278 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 CCP110O43303 1012 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 FAM193AP78312 1265 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 SETQ01105 290 aaPredicted RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 TTC21BQ7Z4L5 1316 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 TTC12Q9H892 705 aaPredicted RBP7.69□□□□□ -1.18
SMC1A-202ENST00000375340 UNC13BO14795 1591 aa7.69□□□□□ -1.18
SMC1A-202ENST00000375340 PI4KAP2A4QPH2 592 aa7.68□□□□□ -1.18
SMC1A-202ENST00000375340 CEBPAP49715 358 aaPredicted RBP7.68□□□□□ -1.18
SMC1A-202ENST00000375340 PI4KAP1Q8N8J0 262 aa7.68□□□□□ -1.18
SMC1A-202ENST00000375340 ZBTB9Q96C00 473 aa7.68□□□□□ -1.18
SMC1A-202ENST00000375340 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.68□□□□□ -1.18
SMC1A-202ENST00000375340 E9PCH4 1651 aa7.68□□□□□ -1.18
SMC1A-202ENST00000375340 GADD45BO75293 160 aaPredicted RBP7.68□□□□□ -1.18
SMC1A-202ENST00000375340 RBM25P49756 843 aaKnown RBP7.68□□□□□ -1.18
SMC1A-202ENST00000375340 EVI5LQ96CN4 794 aa7.68□□□□□ -1.18
SMC1A-202ENST00000375340 ZFP91Q96JP5 570 aaPredicted RBP7.68□□□□□ -1.18
SMC1A-202ENST00000375340 AK2P54819 239 aa7.68□□□□□ -1.18
SMC1A-202ENST00000375340 NMIQ13287 307 aaPredicted RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms