RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 FER1L4A9Z1Z3 1794 aa11.04□□□□□ -0.64
UBR4-201ENST00000375218 TONSLQ96HA7 1378 aa11.04□□□□□ -0.64
UBR4-201ENST00000375218 POU5F1Q01860 360 aaKnown RBP11.04□□□□□ -0.64
UBR4-201ENST00000375218 PNISRQ8TF01 805 aaKnown RBP11.04□□□□□ -0.64
UBR4-201ENST00000375218 USP47Q96K76 1375 aa11.04□□□□□ -0.64
UBR4-201ENST00000375218 NAT2P11245 290 aa11.04□□□□□ -0.64
UBR4-201ENST00000375218 E2F5Q15329 346 aa11.04□□□□□ -0.64
UBR4-201ENST00000375218 CDC5LQ99459 802 aaKnown RBP11.04□□□□□ -0.64
UBR4-201ENST00000375218 GLMNQ92990 594 aa11.03□□□□□ -0.64
UBR4-201ENST00000375218 SAFB2Q14151 953 aaKnown RBP eCLIP11.03□□□□□ -0.64
UBR4-201ENST00000375218 DUSP27Q5VZP5 1158 aa11.03□□□□□ -0.64
UBR4-201ENST00000375218 FBXO31Q5XUX0 539 aaPredicted RBP11.03□□□□□ -0.64
UBR4-201ENST00000375218 DDX10Q13206 875 aaKnown RBP11.03□□□□□ -0.64
UBR4-201ENST00000375218 CCDC34Q96HJ3 373 aa11.03□□□□□ -0.64
UBR4-201ENST00000375218 NOP58Q9Y2X3 529 aaKnown RBP11.03□□□□□ -0.64
UBR4-201ENST00000375218 COL4A3BPQ9Y5P4 624 aa11.03□□□□□ -0.64
UBR4-201ENST00000375218 TLDC2A0PJX2 215 aa11.02□□□□□ -0.64
UBR4-201ENST00000375218 FAM69CQ0P6D2 419 aa11.02□□□□□ -0.65
UBR4-201ENST00000375218 BMS1Q14692 1282 aaKnown RBP11.02□□□□□ -0.65
UBR4-201ENST00000375218 CCDC70Q6NSX1 233 aa11.02□□□□□ -0.65
UBR4-201ENST00000375218 NAT1P18440 290 aa11.02□□□□□ -0.65
UBR4-201ENST00000375218 PDAP1Q13442 181 aaKnown RBP11.02□□□□□ -0.65
UBR4-201ENST00000375218 TOMM20Q15388 145 aa11.02□□□□□ -0.65
UBR4-201ENST00000375218 PARP9Q8IXQ6 854 aa11.02□□□□□ -0.65
UBR4-201ENST00000375218 NAP1L4Q99733 375 aaKnown RBP11.02□□□□□ -0.65
UBR4-201ENST00000375218 CCDC144AA2RUR9 1427 aa11.02□□□□□ -0.65
UBR4-201ENST00000375218 NPHP1O15259 732 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 LONRF1Q17RB8 773 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 CNTLNQ9NXG0 1405 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 A2ML1A8K2U0 1454 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 TSPY4P0CV99 314 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 TSPY10P0CW01 314 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 SATB1Q01826 763 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 L1TD1Q5T7N2 865 aaKnown RBP11.01□□□□□ -0.65
UBR4-201ENST00000375218 TSR2Q969E8 191 aaKnown RBP11.01□□□□□ -0.65
UBR4-201ENST00000375218 VRTNQ9H8Y1 702 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 CEP126Q9P2H0 1117 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 HDAC9Q9UKV0 1011 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 CD53P19397 219 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 ZKSCAN8Q15776 578 aaPredicted RBP11.01□□□□□ -0.65
UBR4-201ENST00000375218 PLEKHG6Q3KR16 790 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 NGDNQ8NEJ9 315 aaKnown RBP11.01□□□□□ -0.65
UBR4-201ENST00000375218 PBXIP1Q96AQ6 731 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 PCMTD1Q96MG8 357 aaPredicted RBP11.01□□□□□ -0.65
UBR4-201ENST00000375218 SPC25Q9HBM1 224 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 GDPD2Q9HCC8 539 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 NLRP1Q9C000 1473 aa11.01□□□□□ -0.65
UBR4-201ENST00000375218 RECKO95980 971 aa11□□□□□ -0.65
UBR4-201ENST00000375218 FILIP1Q7Z7B0 1213 aa11□□□□□ -0.65
UBR4-201ENST00000375218 ALKQ9UM73 1620 aa11□□□□□ -0.65
UBR4-201ENST00000375218 KNDC1Q76NI1 1749 aa11□□□□□ -0.65
UBR4-201ENST00000375218 KIF3BO15066 747 aa11□□□□□ -0.65
UBR4-201ENST00000375218 MAP9Q49MG5 647 aa11□□□□□ -0.65
UBR4-201ENST00000375218 IL17RAQ96F46 866 aa11□□□□□ -0.65
UBR4-201ENST00000375218 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11□□□□□ -0.655e-8■■■□□ 16
UBR4-201ENST00000375218 SRCAPQ6ZRS2 3230 aa11□□□□□ -0.65
UBR4-201ENST00000375218 TOPAZ1Q8N9V7 1692 aa11□□□□□ -0.65
UBR4-201ENST00000375218 NRKQ7Z2Y5 1582 aa11□□□□□ -0.65
UBR4-201ENST00000375218 IGHDP01880 384 aa11□□□□□ -0.65
UBR4-201ENST00000375218 DHX8Q14562 1220 aaKnown RBP11□□□□□ -0.65
UBR4-201ENST00000375218 TTC39BQ5VTQ0 682 aaPredicted RBP11□□□□□ -0.65
UBR4-201ENST00000375218 RAI14Q9P0K7 980 aa11□□□□□ -0.65
UBR4-201ENST00000375218 LDHAP00338 332 aaKnown RBP10.99□□□□□ -0.65
UBR4-201ENST00000375218 FAM200BP0CF97 657 aa10.99□□□□□ -0.65
UBR4-201ENST00000375218 MKRN4PQ13434 485 aaPredicted RBP10.99□□□□□ -0.65
UBR4-201ENST00000375218 ARMC3Q5W041 872 aa10.99□□□□□ -0.65
UBR4-201ENST00000375218 CGNQ9P2M7 1197 aaKnown RBP10.99□□□□□ -0.65
UBR4-201ENST00000375218 LDHCP07864 332 aa10.99□□□□□ -0.65
UBR4-201ENST00000375218 PPP4R3BQ5MIZ7 849 aa10.99□□□□□ -0.65
UBR4-201ENST00000375218 MED14O60244 1454 aa10.99□□□□□ -0.65
UBR4-201ENST00000375218 MRPL42Q9Y6G3 142 aaKnown RBP10.99□□□□□ -0.65
UBR4-201ENST00000375218 XIRP1Q702N8 1843 aaKnown RBP10.98□□□□□ -0.65
UBR4-201ENST00000375218 FLT3P36888 993 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 STAG1Q8WVM7 1258 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 HIP1RO75146 1068 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 PSMD2Q13200 908 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 SF3B2Q13435 895 aaKnown RBP10.98□□□□□ -0.65
UBR4-201ENST00000375218 TTLL12Q14166 644 aaPredicted RBP10.98□□□□□ -0.65
UBR4-201ENST00000375218 E2F4Q16254 413 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 ST20-MTHFSA0A0A6YYL1 179 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 CCDC92Q53HC0 331 aaPredicted RBP10.98□□□□□ -0.65
UBR4-201ENST00000375218 DCAF11Q8TEB1 546 aa10.98□□□□□ -0.65
UBR4-201ENST00000375218 CCDC47Q96A33 483 aaKnown RBP10.98□□□□□ -0.65
UBR4-201ENST00000375218 GAS2L2Q8NHY3 880 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 SCYL1Q96KG9 808 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 JADE2Q9NQC1 790 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 SMC3Q9UQE7 1217 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 MSH5O43196 834 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 LMBRD2Q68DH5 695 aaPredicted RBP10.97□□□□□ -0.65
UBR4-201ENST00000375218 ZNF512BQ96KM6 892 aaPredicted RBP10.97□□□□□ -0.65
UBR4-201ENST00000375218 SYCP2LQ5T4T6 812 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 NT5DC4Q86YG4 428 aa10.97□□□□□ -0.65
UBR4-201ENST00000375218 RBM19Q9Y4C8 960 aaKnown RBP10.97□□□□□ -0.65
UBR4-201ENST00000375218 GIGYF1O75420 1035 aaPredicted RBP10.96□□□□□ -0.65
UBR4-201ENST00000375218 C10orf62Q5T681 223 aaPredicted RBP10.96□□□□□ -0.65
UBR4-201ENST00000375218 JAZF1Q86VZ6 243 aa10.96□□□□□ -0.65
UBR4-201ENST00000375218 CENPOQ9BU64 300 aa10.96□□□□□ -0.65
UBR4-201ENST00000375218 ZNF142P52746 1687 aaPredicted RBP10.96□□□□□ -0.66
UBR4-201ENST00000375218 RMI1Q9H9A7 625 aa10.96□□□□□ -0.66
UBR4-201ENST00000375218 AS3MTQ9HBK9 375 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms