RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 CBFA2T2O43439 604 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 OATP04181 439 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 DDX10Q13206 875 aaKnown RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 EFCAB2Q5VUJ9 269 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 LARP1BQ659C4 914 aaKnown RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 KIAA1211Q6ZU35 1233 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 KLHL23Q8NBE8 558 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 RETREG1Q9H6L5 497 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 JADE2Q9NQC1 790 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 H0YHG0 523 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 HOXA2O43364 376 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 KCNA2P16389 499 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 SARNPP82979 210 aaKnown RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 CDC37Q16543 378 aaPredicted RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 NGDNQ8NEJ9 315 aaKnown RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 SNRNP27Q8WVK2 155 aaKnown RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 TNPO1Q92973 898 aaKnown RBP9.55□□□□□ -0.88
USP48-203ENST00000374732 MUC3BQ9H195 1237 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 SWAP70Q9UH65 585 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 SUFUQ9UMX1 484 aa9.55□□□□□ -0.88
USP48-203ENST00000374732 A6NJR5 290 aa9.54□□□□□ -0.88
USP48-203ENST00000374732 ERCC4Q92889 916 aaPredicted RBP9.54□□□□□ -0.88
USP48-203ENST00000374732 MBD5Q9P267 1494 aa9.54□□□□□ -0.88
USP48-203ENST00000374732 SCAPERQ9BY12 1400 aa9.54□□□□□ -0.88
USP48-203ENST00000374732 ANKRD50Q9ULJ7 1429 aa9.54□□□□□ -0.88
USP48-203ENST00000374732 TIMM44O43615 452 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 TXNDC2Q86VQ3 553 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 ZSCAN30Q86W11 494 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 ARL10Q8N8L6 244 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 SERPINA10Q9UK55 444 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 PEX19P40855 299 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 USP5P45974 858 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 L3MBTL2Q969R5 705 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 RBM47A0AV96 593 aaKnown RBP9.53□□□□□ -0.88
USP48-203ENST00000374732 PPP2R5AQ15172 486 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 IQCF2Q8IXL9 164 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 CLASRPQ8N2M8 674 aaKnown RBP9.53□□□□□ -0.88
USP48-203ENST00000374732 MNS1Q8NEH6 495 aa9.53□□□□□ -0.88
USP48-203ENST00000374732 RABL2AQ9UBK7 228 aaPredicted RBP9.53□□□□□ -0.88
USP48-203ENST00000374732 NAALADL2Q58DX5 795 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 SND1Q7KZF4 910 aaKnown RBP eCLIP9.52□□□□□ -0.89
USP48-203ENST00000374732 CERKQ8TCT0 537 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 CDC5LQ99459 802 aaKnown RBP9.52□□□□□ -0.89
USP48-203ENST00000374732 MED4Q9NPJ6 270 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 A2ML1A8K2U0 1454 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 HMMRO75330 724 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 EIF3JO75822 258 aaKnown RBP9.52□□□□□ -0.89
USP48-203ENST00000374732 EIF4G2P78344 907 aaKnown RBP eCLIP9.52□□□□□ -0.89
USP48-203ENST00000374732 FLIIQ13045 1269 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 ZNF394Q53GI3 561 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 VPS37AQ8NEZ2 397 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 TIGD1Q96MW7 591 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 CCDC141Q6ZP82 1450 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 NLRP1Q9C000 1473 aa9.52□□□□□ -0.89
USP48-203ENST00000374732 CEP170BQ9Y4F5 1589 aaPredicted RBP9.52□□□□□ -0.89
USP48-203ENST00000374732 ATP7AQ04656 1500 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 XBP1P17861 261 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 TBX4P57082 545 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 IGBP1P78318 339 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 SPACA7Q96KW9 195 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 ARHGAP5Q13017 1502 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 KIF3CO14782 793 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 GIGYF1O75420 1035 aaPredicted RBP9.51□□□□□ -0.89
USP48-203ENST00000374732 SENP7Q9BQF6 1050 aa9.51□□□□□ -0.89
USP48-203ENST00000374732 ZMYND10O75800 440 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 TSPY4P0CV99 314 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 TSPY10P0CW01 314 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 INHBEP58166 350 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 PTPROQ16827 1216 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 CCDC92Q53HC0 331 aaPredicted RBP9.5□□□□□ -0.89
USP48-203ENST00000374732 PNISRQ8TF01 805 aaKnown RBP9.5□□□□□ -0.89
USP48-203ENST00000374732 SFMBT1Q9UHJ3 866 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 TULP2O00295 520 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 CCDC175P0C221 793 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 VDRP11473 427 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 KIAA2012Q0VF49 1180 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 FAM184AQ8NB25 1140 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 CCDC34Q96HJ3 373 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 CCP110O43303 1012 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 NBPF7P0C2Y1 421 aaPredicted RBP9.5□□□□□ -0.89
USP48-203ENST00000374732 C11orf91Q3C1V1 193 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 AMOTQ4VCS5 1084 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 ARMC3Q5W041 872 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 ELOA2Q8IYF1 753 aaPredicted RBP9.5□□□□□ -0.89
USP48-203ENST00000374732 IP6K2Q9UHH9 426 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 ITM2BQ9Y287 266 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 SPATA31E1Q6ZUB1 1445 aa9.5□□□□□ -0.89
USP48-203ENST00000374732 PPFIA3O75145 1194 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 HSPA5P11021 654 aaKnown RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 EIF5P55010 431 aaKnown RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 INF2Q27J81 1249 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 ZNF771Q7L3S4 317 aaPredicted RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 TRIM74Q86UV6 250 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 TRIM73Q86UV7 250 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 ZNF512BQ96KM6 892 aaPredicted RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 TSPYL2Q9H2G4 693 aaPredicted RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 RWDD1Q9H446 243 aaPredicted RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 USP25Q9UHP3 1055 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 PAXBP1Q9Y5B6 917 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 TRIM64CA6NLI5 447 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms