RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PDE4AP27815 886 aa18.14■□□□□ 0.49
HMGA1-203ENST00000374116 MBIPQ9NS73 344 aa18.14■□□□□ 0.49
HMGA1-203ENST00000374116 CCNL1Q9UK58 526 aaPredicted RBP18.14■□□□□ 0.49
HMGA1-203ENST00000374116 LY75O60449 1722 aa18.13■□□□□ 0.49
HMGA1-203ENST00000374116 ATP6V1AP38606 617 aa18.13■□□□□ 0.49
HMGA1-203ENST00000374116 SMARCC1Q92922 1105 aaPredicted RBP18.13■□□□□ 0.49
HMGA1-203ENST00000374116 BACH2Q9BYV9 841 aa18.13■□□□□ 0.49
HMGA1-203ENST00000374116 KCPQ6ZWJ8 1503 aa18.12■□□□□ 0.49
HMGA1-203ENST00000374116 CHL1O00533 1208 aa18.12■□□□□ 0.49
HMGA1-203ENST00000374116 CANXP27824 592 aaKnown RBP18.12■□□□□ 0.49
HMGA1-203ENST00000374116 ITPK1Q13572 414 aa18.12■□□□□ 0.49
HMGA1-203ENST00000374116 CFAP44Q96MT7 982 aa18.12■□□□□ 0.49
HMGA1-203ENST00000374116 KDM3BQ7LBC6 1761 aa18.12■□□□□ 0.49
HMGA1-203ENST00000374116 AAMPQ13685 434 aa18.11■□□□□ 0.49
HMGA1-203ENST00000374116 ZNF853P0CG23 659 aa18.1■□□□□ 0.49
HMGA1-203ENST00000374116 SMIM5Q71RC9 77 aa18.1■□□□□ 0.49
HMGA1-203ENST00000374116 UBR2Q8IWV8 1755 aa18.1■□□□□ 0.49
HMGA1-203ENST00000374116 ELL2O00472 640 aaPredicted RBP18.09■□□□□ 0.49
HMGA1-203ENST00000374116 DNAJC10Q8IXB1 793 aa18.09■□□□□ 0.49
HMGA1-203ENST00000374116 IFT57Q9NWB7 429 aa18.09■□□□□ 0.49
HMGA1-203ENST00000374116 EIF4A1P60842 406 aaKnown RBP18.09■□□□□ 0.49
HMGA1-203ENST00000374116 GNAI1P63096 354 aa18.09■□□□□ 0.49
HMGA1-203ENST00000374116 LINC00116Q8NCU8 138 aa18.09■□□□□ 0.49
HMGA1-203ENST00000374116 FMNL2Q96PY5 1086 aa18.09■□□□□ 0.49
HMGA1-203ENST00000374116 CALD1Q05682 793 aaKnown RBP18.08■□□□□ 0.48
HMGA1-203ENST00000374116 EXOSC9Q06265 439 aaKnown RBP18.08■□□□□ 0.48
HMGA1-203ENST00000374116 PIP4K2AP48426 406 aaPredicted RBP18.07■□□□□ 0.48
HMGA1-203ENST00000374116 USP16Q9Y5T5 823 aa18.07■□□□□ 0.48
HMGA1-203ENST00000374116 HEG1Q9ULI3 1381 aa18.07■□□□□ 0.48
HMGA1-203ENST00000374116 NECTIN2Q92692 538 aa18.07■□□□□ 0.48
HMGA1-203ENST00000374116 RREB1Q92766 1687 aa18.07■□□□□ 0.48
HMGA1-203ENST00000374116 NUP188Q5SRE5 1749 aa18.06■□□□□ 0.48
HMGA1-203ENST00000374116 RGPD3A6NKT7 1758 aaPredicted RBP18.06■□□□□ 0.48
HMGA1-203ENST00000374116 RGPD4Q7Z3J3 1758 aa18.06■□□□□ 0.48
HMGA1-203ENST00000374116 C5P01031 1676 aa18.06■□□□□ 0.48
HMGA1-203ENST00000374116 SLC27A3Q5K4L6 730 aa18.06■□□□□ 0.48
HMGA1-203ENST00000374116 FRAT1Q92837 279 aaPredicted RBP18.06■□□□□ 0.48
HMGA1-203ENST00000374116 TAF1LQ8IZX4 1826 aa18.06■□□□□ 0.48
HMGA1-203ENST00000374116 TJP1Q07157 1748 aa18.06■□□□□ 0.48
HMGA1-203ENST00000374116 ZNF827Q17R98 1081 aa18.05■□□□□ 0.48
HMGA1-203ENST00000374116 TSPYL6Q8N831 410 aa18.05■□□□□ 0.48
HMGA1-203ENST00000374116 C8orf58Q8NAV2 365 aa18.05■□□□□ 0.48
HMGA1-203ENST00000374116 PANK1Q8TE04 598 aa18.05■□□□□ 0.48
HMGA1-203ENST00000374116 CLUAP1Q96AJ1 413 aa18.05■□□□□ 0.48
HMGA1-203ENST00000374116 AMIGO3Q86WK7 504 aa18.05■□□□□ 0.48
HMGA1-203ENST00000374116 GIGYF1O75420 1035 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-203ENST00000374116 EIF2S2P20042 333 aaKnown RBP18.04■□□□□ 0.48
HMGA1-203ENST00000374116 COG6Q9Y2V7 657 aa18.04■□□□□ 0.48
HMGA1-203ENST00000374116 SNRPA1P09661 255 aaKnown RBP18.03■□□□□ 0.48
HMGA1-203ENST00000374116 RLBP1P12271 317 aa18.03■□□□□ 0.48
HMGA1-203ENST00000374116 BABAM1Q9NWV8 329 aa18.03■□□□□ 0.48
HMGA1-203ENST00000374116 MYH14Q7Z406 1995 aaKnown RBP18.03■□□□□ 0.48
HMGA1-203ENST00000374116 A1BGP04217 495 aa18.02■□□□□ 0.48
HMGA1-203ENST00000374116 CRKLP46109 303 aaKnown RBP18.02■□□□□ 0.48
HMGA1-203ENST00000374116 CYP19A1P11511 503 aaPredicted RBP18.02■□□□□ 0.47
HMGA1-203ENST00000374116 SKAP1Q86WV1 359 aa18.02■□□□□ 0.47
HMGA1-203ENST00000374116 VSIG10Q8N0Z9 540 aa18.02■□□□□ 0.47
HMGA1-203ENST00000374116 SSH1Q8WYL5 1049 aa18.02■□□□□ 0.47
HMGA1-203ENST00000374116 BCL2L13Q9BXK5 485 aa18.02■□□□□ 0.47
HMGA1-203ENST00000374116 C4BP0C0L5 1744 aa18.02■□□□□ 0.47
HMGA1-203ENST00000374116 COL5A3P25940 1745 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-203ENST00000374116 PSDA5PKW4 1024 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-203ENST00000374116 PHF14O94880 888 aa18.01■□□□□ 0.47
HMGA1-203ENST00000374116 BRPF1P55201 1214 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-203ENST00000374116 ZNF330Q9Y3S2 320 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-203ENST00000374116 ZNF428Q96B54 188 aa18■□□□□ 0.47
HMGA1-203ENST00000374116 PDGFDQ9GZP0 370 aaPredicted RBP18■□□□□ 0.47
HMGA1-203ENST00000374116 TNNQ9UQP3 1299 aa18■□□□□ 0.47
HMGA1-203ENST00000374116 GNPATO15228 680 aa18■□□□□ 0.47
HMGA1-203ENST00000374116 ANXA1P04083 346 aa18■□□□□ 0.47
HMGA1-203ENST00000374116 INTS5Q6P9B9 1019 aaKnown RBP18■□□□□ 0.47
HMGA1-203ENST00000374116 RTN4Q9NQC3 1192 aaKnown RBP18■□□□□ 0.47
HMGA1-203ENST00000374116 TFCP2L1Q9NZI6 479 aa18■□□□□ 0.47
HMGA1-203ENST00000374116 ZBTB1Q9Y2K1 713 aa18■□□□□ 0.47
HMGA1-203ENST00000374116 IGHDP01880 384 aa17.99■□□□□ 0.47
HMGA1-203ENST00000374116 R3HDM1Q15032 1099 aaKnown RBP17.99■□□□□ 0.47
HMGA1-203ENST00000374116 ALDH1L2Q3SY69 923 aa17.99■□□□□ 0.47
HMGA1-203ENST00000374116 ZKSCAN2Q63HK3 967 aa17.99■□□□□ 0.47
HMGA1-203ENST00000374116 AKT1S1Q96B36 256 aa17.99■□□□□ 0.47
HMGA1-203ENST00000374116 AK7Q96M32 723 aa17.99■□□□□ 0.47
HMGA1-203ENST00000374116 SLC15A2Q16348 729 aa17.98■□□□□ 0.47
HMGA1-203ENST00000374116 ZNF831Q5JPB2 1677 aa17.98■□□□□ 0.47
HMGA1-203ENST00000374116 TUBGCP6Q96RT7 1819 aa17.98■□□□□ 0.47
HMGA1-203ENST00000374116 STARD3NLO95772 234 aa17.98■□□□□ 0.47
HMGA1-203ENST00000374116 TWISTNBQ3B726 338 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-203ENST00000374116 FAM161AQ3B820 660 aa17.98■□□□□ 0.47
HMGA1-203ENST00000374116 SMC4Q9NTJ3 1288 aa17.98■□□□□ 0.47
HMGA1-203ENST00000374116 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-203ENST00000374116 MYL6BP14649 208 aa17.97■□□□□ 0.47
HMGA1-203ENST00000374116 NBPF14Q5TI25 921 aa17.97■□□□□ 0.47
HMGA1-203ENST00000374116 NPM2Q86SE8 214 aaKnown RBP17.97■□□□□ 0.47
HMGA1-203ENST00000374116 CCDC87Q9NVE4 849 aa17.97■□□□□ 0.47
HMGA1-203ENST00000374116 STK32BQ9NY57 414 aa17.97■□□□□ 0.47
HMGA1-203ENST00000374116 NBPF26B4DH59 902 aa17.96■□□□□ 0.47
HMGA1-203ENST00000374116 VAMP4O75379 141 aa17.96■□□□□ 0.47
HMGA1-203ENST00000374116 PROSER3Q2NL68 480 aa17.96■□□□□ 0.47
HMGA1-203ENST00000374116 NBPF10Q6P3W6 841 aaKnown RBP17.96■□□□□ 0.47
HMGA1-203ENST00000374116 NBPF15Q8N660 670 aa17.96■□□□□ 0.47
HMGA1-203ENST00000374116 DDRGK1Q96HY6 314 aa17.96■□□□□ 0.47
HMGA1-203ENST00000374116 TRIM27P14373 513 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms