RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 NOL7Q9UMY1 257 aaKnown RBP16.73■□□□□ 0.27
TRAF1-201ENST00000373887 TOM1O60784 492 aa16.73■□□□□ 0.27
TRAF1-201ENST00000373887 CADPS2Q86UW7 1296 aa16.73■□□□□ 0.27
TRAF1-201ENST00000373887 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.73■□□□□ 0.27
TRAF1-201ENST00000373887 A0A087WZG4 1122 aa16.73■□□□□ 0.27
TRAF1-201ENST00000373887 EIF5P55010 431 aaKnown RBP16.73■□□□□ 0.27
TRAF1-201ENST00000373887 JAKMIP3Q5VZ66 844 aa16.73■□□□□ 0.27
TRAF1-201ENST00000373887 BLOC1S2Q6QNY1 142 aa16.73■□□□□ 0.27
TRAF1-201ENST00000373887 PPM1FP49593 454 aaPredicted RBP16.73■□□□□ 0.27
TRAF1-201ENST00000373887 MAP2K1Q02750 393 aaPredicted RBP16.72■□□□□ 0.27
TRAF1-201ENST00000373887 GIMAP7Q8NHV1 300 aa16.72■□□□□ 0.27
TRAF1-201ENST00000373887 MAP3K2Q9Y2U5 619 aa16.72■□□□□ 0.27
TRAF1-201ENST00000373887 CCDC82Q8N4S0 544 aa16.72■□□□□ 0.27
TRAF1-201ENST00000373887 TICAM2Q86XR7 235 aa16.72■□□□□ 0.27
TRAF1-201ENST00000373887 WDR33Q9C0J8 1336 aaKnown RBP16.72■□□□□ 0.27
TRAF1-201ENST00000373887 EPB41L2O43491 1005 aaKnown RBP16.72■□□□□ 0.27
TRAF1-201ENST00000373887 K7ELQ4 463 aaPredicted RBP16.71■□□□□ 0.27
TRAF1-201ENST00000373887 NF2P35240 595 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 ANKRD18BA2A2Z9 1011 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 CAMK4Q16566 473 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 PRDM10Q9NQV6 1147 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 AKAP2Q9Y2D5 859 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 ANKRD1Q15327 319 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 IMMTQ16891 758 aaKnown RBP16.71■□□□□ 0.27
TRAF1-201ENST00000373887 IFNL2Q8IZJ0 200 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 CEP57L1Q8IYX8 460 aa16.71■□□□□ 0.27
TRAF1-201ENST00000373887 UPF3BQ9BZI7 483 aaKnown RBP16.71■□□□□ 0.27
TRAF1-201ENST00000373887 C11orf95C9JLR9 678 aaPredicted RBP16.7■□□□□ 0.26
TRAF1-201ENST00000373887 ECM2O94769 699 aaPredicted RBP16.7■□□□□ 0.26
TRAF1-201ENST00000373887 CFAP45Q9UL16 551 aa16.7■□□□□ 0.26
TRAF1-201ENST00000373887 CASTP20810 708 aaKnown RBP16.7■□□□□ 0.26
TRAF1-201ENST00000373887 TRMT1LQ7Z2T5 733 aaKnown RBP16.7■□□□□ 0.26
TRAF1-201ENST00000373887 ASXL2Q76L83 1435 aa16.7■□□□□ 0.26
TRAF1-201ENST00000373887 USP8P40818 1118 aa16.7■□□□□ 0.26
TRAF1-201ENST00000373887 TMX1Q9H3N1 280 aa16.7■□□□□ 0.26
TRAF1-201ENST00000373887 SLC5A1P13866 664 aa16.7■□□□□ 0.26
TRAF1-201ENST00000373887 RANBP6O60518 1105 aaKnown RBP16.69■□□□□ 0.26
TRAF1-201ENST00000373887 DESP17661 470 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 ATP6V1AP38606 617 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 CCDC96Q2M329 555 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 CCDC91Q7Z6B0 441 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 NUP62CLQ9H1M0 184 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 DNAAF4Q8WXU2 420 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 SSH1Q8WYL5 1049 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 GOPCQ9HD26 462 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 BMP2KQ9NSY1 1161 aaPredicted RBP16.69■□□□□ 0.26
TRAF1-201ENST00000373887 DNA2P51530 1060 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 SLFN5Q08AF3 891 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 CTNNA3Q9UI47 895 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 CCDC148Q8NFR7 591 aa16.69■□□□□ 0.26
TRAF1-201ENST00000373887 ARHGAP29Q52LW3 1261 aa16.68■□□□□ 0.26
TRAF1-201ENST00000373887 SLC39A6Q13433 755 aa16.68■□□□□ 0.26
TRAF1-201ENST00000373887 SNRKQ9NRH2 765 aa16.68■□□□□ 0.26
TRAF1-201ENST00000373887 SCLT1Q96NL6 688 aa16.68■□□□□ 0.26
TRAF1-201ENST00000373887 THOC2Q8NI27 1593 aaKnown RBP16.68■□□□□ 0.26
TRAF1-201ENST00000373887 DHX8Q14562 1220 aaKnown RBP16.67■□□□□ 0.26
TRAF1-201ENST00000373887 PRPF40BQ6NWY9 871 aaKnown RBP16.67■□□□□ 0.26
TRAF1-201ENST00000373887 TMCO3Q6UWJ1 677 aa16.67■□□□□ 0.26
TRAF1-201ENST00000373887 CFAP100Q494V2 611 aa16.67■□□□□ 0.26
TRAF1-201ENST00000373887 ANAPC15P60006 121 aa16.67■□□□□ 0.26
TRAF1-201ENST00000373887 NAPBQ9H115 298 aa16.67■□□□□ 0.26
TRAF1-201ENST00000373887 DDX46Q7L014 1031 aaKnown RBP16.67■□□□□ 0.26
TRAF1-201ENST00000373887 SKAP1Q86WV1 359 aa16.67■□□□□ 0.26
TRAF1-201ENST00000373887 BCCIPQ9P287 314 aaKnown RBP eCLIP16.67■□□□□ 0.26
TRAF1-201ENST00000373887 F8W031 263 aaPredicted RBP16.67■□□□□ 0.26
TRAF1-201ENST00000373887 KIF1BPQ96EK5 621 aa16.67■□□□□ 0.26
TRAF1-201ENST00000373887 NBPF6Q5VWK0 638 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 NBPF5PQ86XG9 351 aaPredicted RBP16.66■□□□□ 0.26
TRAF1-201ENST00000373887 NBPF4Q96M43 638 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 UBE4AQ14139 1066 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 LRRC59Q96AG4 307 aaKnown RBP16.66■□□□□ 0.26
TRAF1-201ENST00000373887 CRACR2AQ9BSW2 395 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 HYPKQ9NX55 129 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 SEC63Q9UGP8 760 aaKnown RBP16.66■□□□□ 0.26
TRAF1-201ENST00000373887 MX1P20591 662 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 PDCL2Q8N4E4 241 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 ZRANB1Q9UGI0 708 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 CCDC178Q5BJE1 867 aa16.66■□□□□ 0.26
TRAF1-201ENST00000373887 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.66■□□□□ 0.26
TRAF1-201ENST00000373887 SHTN1A0MZ66 631 aa16.65■□□□□ 0.26
TRAF1-201ENST00000373887 LARP6Q9BRS8 491 aaKnown RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 DHX29Q7Z478 1369 aaKnown RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 CBX1P83916 185 aa16.65■□□□□ 0.26
TRAF1-201ENST00000373887 UBXN4Q92575 508 aa16.65■□□□□ 0.26
TRAF1-201ENST00000373887 RPAP2Q8IXW5 612 aaPredicted RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 DBF4Q9UBU7 674 aaPredicted RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 ST5P78524 1137 aa16.65■□□□□ 0.26
TRAF1-201ENST00000373887 ZNF444Q8N0Y2 327 aaPredicted RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 CEP63Q96MT8 703 aa16.65■□□□□ 0.26
TRAF1-201ENST00000373887 UBE3BQ7Z3V4 1068 aa16.65■□□□□ 0.26
TRAF1-201ENST00000373887 ZCRB1Q8TBF4 217 aaKnown RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 C14orf93Q9H972 538 aaKnown RBP16.65■□□□□ 0.26
TRAF1-201ENST00000373887 MAP3K12Q12852 859 aa16.64■□□□□ 0.26
TRAF1-201ENST00000373887 ZNF397Q8NF99 534 aaPredicted RBP16.64■□□□□ 0.26
TRAF1-201ENST00000373887 IQSEC3Q9UPP2 1182 aaPredicted RBP16.64■□□□□ 0.26
TRAF1-201ENST00000373887 KDM5BQ9UGL1 1544 aa16.64■□□□□ 0.26
TRAF1-201ENST00000373887 SMTNL1A8MU46 457 aa16.64■□□□□ 0.25
TRAF1-201ENST00000373887 TRERF1Q96PN7 1200 aa16.64■□□□□ 0.25
TRAF1-201ENST00000373887 CDKL5O76039 1030 aa16.64■□□□□ 0.25
TRAF1-201ENST00000373887 LDHAL6AQ6ZMR3 332 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms