RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 DCAF5Q96JK2 942 aa10.79□□□□□ -0.68
SNRNP40-202ENST00000373720 ERBB4Q15303 1308 aa10.79□□□□□ -0.68
SNRNP40-202ENST00000373720 KDM3BQ7LBC6 1761 aa10.78□□□□□ -0.68
SNRNP40-202ENST00000373720 POTEJP0CG39 1038 aa10.78□□□□□ -0.68
SNRNP40-202ENST00000373720 ATN1P54259 1190 aaPredicted RBP10.78□□□□□ -0.68
SNRNP40-202ENST00000373720 TICAM2Q86XR7 235 aa10.78□□□□□ -0.68
SNRNP40-202ENST00000373720 SIRT2Q8IXJ6 389 aa10.78□□□□□ -0.68
SNRNP40-202ENST00000373720 IFNL2Q8IZJ0 200 aa10.78□□□□□ -0.68
SNRNP40-202ENST00000373720 REC8O95072 547 aa10.77□□□□□ -0.69
SNRNP40-202ENST00000373720 NUTM2GQ5VZR2 741 aa10.77□□□□□ -0.69
SNRNP40-202ENST00000373720 KIF12Q96FN5 646 aa10.77□□□□□ -0.69
SNRNP40-202ENST00000373720 LTV1Q96GA3 475 aaPredicted RBP10.77□□□□□ -0.69
SNRNP40-202ENST00000373720 LNPKQ9C0E8 428 aa10.77□□□□□ -0.69
SNRNP40-202ENST00000373720 SCUBE2Q9NQ36 999 aa10.77□□□□□ -0.69
SNRNP40-202ENST00000373720 PXDNQ92626 1479 aa10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 UBTFL1P0CB47 393 aaPredicted RBP10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 MTX1Q13505 466 aa10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 ERC1Q8IUD2 1116 aa10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 PROM2Q8N271 834 aa10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 LRRCC1Q9C099 1032 aa10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 CIZ1Q9ULV3 898 aaPredicted RBP10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 SOS2Q07890 1332 aaPredicted RBP10.76□□□□□ -0.69
SNRNP40-202ENST00000373720 GIGYF1O75420 1035 aaPredicted RBP10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 TTC22Q5TAA0 569 aa10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 PLEKHM2Q8IWE5 1019 aa10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 SSH3Q8TE77 659 aa10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 DNAAF4Q8WXU2 420 aa10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 FAM163AQ96GL9 167 aaPredicted RBP10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 DDX21Q9NR30 783 aaKnown RBP eCLIP10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 PCDH10Q9P2E7 1040 aa10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 STAP2Q9UGK3 403 aa10.75□□□□□ -0.69
SNRNP40-202ENST00000373720 LMOD2Q6P5Q4 547 aa10.74□□□□□ -0.69
SNRNP40-202ENST00000373720 SLC4A10Q6U841 1118 aa10.74□□□□□ -0.69
SNRNP40-202ENST00000373720 KSR2Q6VAB6 950 aa10.74□□□□□ -0.69
SNRNP40-202ENST00000373720 HSCBQ8IWL3 235 aa10.74□□□□□ -0.69
SNRNP40-202ENST00000373720 COL15A1P39059 1388 aa10.74□□□□□ -0.69
SNRNP40-202ENST00000373720 MRC1P22897 1456 aa10.74□□□□□ -0.69
SNRNP40-202ENST00000373720 ERVV-2B6SEH9 535 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 MCM2P49736 904 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 LINS1Q8NG48 757 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 MEIS3Q99687 375 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 SLC52A2Q9HAB3 445 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 MIS18AQ9NYP9 233 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 SLAIN2Q9P270 581 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 UTYO14607 1347 aa10.73□□□□□ -0.69
SNRNP40-202ENST00000373720 COL18A1P39060 1754 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 SNRPA1P09661 255 aaKnown RBP10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 PHKG2P15735 406 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 NEXNQ0ZGT2 675 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 RABEP1Q15276 862 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 BEND3Q5T5X7 828 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 ZNF790Q6PG37 636 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 LARP1Q6PKG0 1096 aaKnown RBP10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 KIF1BPQ96EK5 621 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 USP44Q9H0E7 712 aa10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 PARP4Q9UKK3 1724 aaKnown RBP10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 SIPA1L3O60292 1781 aaPredicted RBP10.72□□□□□ -0.69
SNRNP40-202ENST00000373720 MAP3K13O43283 966 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 SEC24BO95487 1268 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 MCCP23508 829 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 ANAPC15P60006 121 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 NKX1-1Q15270 411 aaPredicted RBP10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 KRT24Q2M2I5 525 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 TTC41PQ6P2S7 1318 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 WDR17Q8IZU2 1322 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 TTC5Q8N0Z6 440 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 FMNL2Q96PY5 1086 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 CARD10Q9BWT7 1032 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 PCDH11XQ9BZA7 1347 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 PCDH11YQ9BZA8 1340 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 LGR6Q9HBX8 967 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 BMP2KQ9NSY1 1161 aaPredicted RBP10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 NLRP2Q9NX02 1062 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 CHMP5Q9NZZ3 219 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 AXIN2Q9Y2T1 843 aa10.71□□□□□ -0.69
SNRNP40-202ENST00000373720 PKD1L3Q7Z443 1732 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 CSB-PGBD3P0DP91 1061 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 MFAP1P55081 439 aaKnown RBP10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 MPRIPQ6WCQ1 1025 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 TBC1D9Q6ZT07 1266 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 BRINP3Q76B58 766 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 G2E3Q7L622 706 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 SKAP1Q86WV1 359 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 LRRC59Q96AG4 307 aaKnown RBP10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 IL17RAQ96F46 866 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 GPATCH3Q96I76 525 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 TEX13AQ9BXU3 409 aaPredicted RBP10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 CRYBG1Q9Y4K1 1723 aa10.7□□□□□ -0.7
SNRNP40-202ENST00000373720 USP42Q9H9J4 1324 aaKnown RBP10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 ERC2O15083 957 aa10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 PDIA4P13667 645 aaKnown RBP10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 PDE1AP54750 535 aa10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 USHBP1Q8N6Y0 703 aa10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 TBC1D2Q9BYX2 928 aa10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 C1orf115Q9H7X2 142 aa10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 SCN11AQ9UI33 1791 aa10.69□□□□□ -0.7
SNRNP40-202ENST00000373720 STRCP1A6NGW2 1772 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 SALL3Q9BXA9 1300 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 PI4KAP2A4QPH2 592 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 HIP1O00291 1037 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms