RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 PLB1Q6P1J6 1458 aa18.57■□□□□ 0.56
COL17A1-202ENST00000369733 WASF1Q92558 559 aa18.57■□□□□ 0.56
COL17A1-202ENST00000369733 SLC3A2P08195 630 aaKnown RBP18.57■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC171Q6TFL3 1326 aa18.57■□□□□ 0.56
COL17A1-202ENST00000369733 CAVIN2O95810 425 aa18.57■□□□□ 0.56
COL17A1-202ENST00000369733 NME9Q86XW9 330 aa18.57■□□□□ 0.56
COL17A1-202ENST00000369733 C8orf76Q96K31 380 aa18.57■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC43Q96MW1 224 aaKnown RBP18.57■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC61Q9Y6R9 512 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 TMX1Q9H3N1 280 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 UGGT2Q9NYU1 1516 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 HMGB1P09429 215 aaKnown RBP18.56■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC57Q2TAC2 916 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 TANGO6Q9C0B7 1094 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 ODF2Q5BJF6 829 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC186Q7Z3E2 898 aa18.56■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC8Q9H0W5 538 aaPredicted RBP18.55■□□□□ 0.56
COL17A1-202ENST00000369733 TAF7Q15545 349 aaPredicted RBP18.55■□□□□ 0.56
COL17A1-202ENST00000369733 CEP126Q9P2H0 1117 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 TATP17735 454 aaPredicted RBP18.55■□□□□ 0.56
COL17A1-202ENST00000369733 EIF5P55010 431 aaKnown RBP18.55■□□□□ 0.56
COL17A1-202ENST00000369733 ESCO1Q5FWF5 840 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 FLIIQ13045 1269 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 MAP9Q49MG5 647 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 CYB5RLQ6IPT4 315 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 FAM200AQ8TCP9 573 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 EVI5LQ96CN4 794 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 CEP131Q9UPN4 1083 aa18.55■□□□□ 0.56
COL17A1-202ENST00000369733 SHTN1A0MZ66 631 aa18.54■□□□□ 0.56
COL17A1-202ENST00000369733 TIGD1Q96MW7 591 aa18.54■□□□□ 0.56
COL17A1-202ENST00000369733 ANO6Q4KMQ2 910 aa18.54■□□□□ 0.56
COL17A1-202ENST00000369733 BIN1O00499 593 aa18.54■□□□□ 0.56
COL17A1-202ENST00000369733 FAM177BA6PVY3 158 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 FAM69CQ0P6D2 419 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 ESYT1Q9BSJ8 1104 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 ANAPC15P60006 121 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 RBM33Q96EV2 1170 aaKnown RBP18.53■□□□□ 0.56
COL17A1-202ENST00000369733 PRM3Q9NNZ6 103 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 KRT18P05783 430 aaKnown RBP18.53■□□□□ 0.56
COL17A1-202ENST00000369733 CCDC150Q8NCX0 1101 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 GTPBP4Q9BZE4 634 aaKnown RBP18.53■□□□□ 0.56
COL17A1-202ENST00000369733 PRAG1Q86YV5 1406 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 ZFYVE27Q5T4F4 411 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 WAPLQ7Z5K2 1190 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 THOC2Q8NI27 1593 aaKnown RBP18.53■□□□□ 0.56
COL17A1-202ENST00000369733 ECHDC1Q9NTX5 307 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 PDE1AP54750 535 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 KLHL10Q6JEL2 608 aa18.53■□□□□ 0.56
COL17A1-202ENST00000369733 FAM83GA6ND36 823 aa18.52■□□□□ 0.56
COL17A1-202ENST00000369733 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.52■□□□□ 0.56
COL17A1-202ENST00000369733 CCT2P78371 535 aaKnown RBP18.52■□□□□ 0.56
COL17A1-202ENST00000369733 ZGPATQ8N5A5 531 aaKnown RBP18.52■□□□□ 0.56
COL17A1-202ENST00000369733 DNAAF4Q8WXU2 420 aa18.52■□□□□ 0.56
COL17A1-202ENST00000369733 UBAC1Q9BSL1 405 aa18.52■□□□□ 0.56
COL17A1-202ENST00000369733 GOLGA6L7A0A1B0GV03 622 aa18.52■□□□□ 0.56
COL17A1-202ENST00000369733 CABP4P57796 275 aa18.52■□□□□ 0.56
COL17A1-202ENST00000369733 C16orf71Q8IYS4 520 aaPredicted RBP18.52■□□□□ 0.56
COL17A1-202ENST00000369733 ANKRD44Q8N8A2 993 aa18.52■□□□□ 0.55
COL17A1-202ENST00000369733 MCM3P25205 808 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 MRPL50Q8N5N7 158 aaKnown RBP18.51■□□□□ 0.55
COL17A1-202ENST00000369733 SKILP12757 684 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 PLCD4Q9BRC7 762 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 POTEB2H3BUK9 544 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 TDO2P48775 406 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 MEIS3Q99687 375 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 POLR3AO14802 1390 aaPredicted RBP18.51■□□□□ 0.55
COL17A1-202ENST00000369733 ANKRD36BQ8N2N9 1353 aa18.51■□□□□ 0.55
COL17A1-202ENST00000369733 NECAB1Q8N987 351 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 F13A1P00488 732 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 LMAN1P49257 510 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 OSCARQ8IYS5 282 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 RBM25P49756 843 aaKnown RBP18.5■□□□□ 0.55
COL17A1-202ENST00000369733 CNNM3Q8NE01 707 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 CPLX3Q8WVH0 158 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 RBSNQ9H1K0 784 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 GOLGA6L9A6NEM1 432 aa18.5■□□□□ 0.55
COL17A1-202ENST00000369733 ZBTB40Q9NUA8 1239 aa18.49■□□□□ 0.55
COL17A1-202ENST00000369733 NOS1P29475 1434 aa18.49■□□□□ 0.55
COL17A1-202ENST00000369733 PPP1R42Q7Z4L9 355 aa18.49■□□□□ 0.55
COL17A1-202ENST00000369733 SPINK5Q9NQ38 1064 aaPredicted RBP18.49■□□□□ 0.55
COL17A1-202ENST00000369733 GNL3LQ9NVN8 582 aaKnown RBP18.49■□□□□ 0.55
COL17A1-202ENST00000369733 PIK3C2GO75747 1445 aa18.49■□□□□ 0.55
COL17A1-202ENST00000369733 DNM1Q05193 864 aaKnown RBP18.48■□□□□ 0.55
COL17A1-202ENST00000369733 ZNF397Q8NF99 534 aaPredicted RBP18.48■□□□□ 0.55
COL17A1-202ENST00000369733 RAI14Q9P0K7 980 aa18.48■□□□□ 0.55
COL17A1-202ENST00000369733 CTDP1Q9Y5B0 961 aaPredicted RBP18.48■□□□□ 0.55
COL17A1-202ENST00000369733 IDH1O75874 414 aaKnown RBP18.48■□□□□ 0.55
COL17A1-202ENST00000369733 DHX37Q8IY37 1157 aaKnown RBP18.48■□□□□ 0.55
COL17A1-202ENST00000369733 ZSCAN16Q9H4T2 348 aaPredicted RBP18.48■□□□□ 0.55
COL17A1-202ENST00000369733 DACT1Q9NYF0 836 aa18.48■□□□□ 0.55
COL17A1-202ENST00000369733 SYCP1Q15431 976 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 SPA17Q15506 151 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 TESK2Q96S53 571 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 NUP160Q12769 1436 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 ATF3P18847 181 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 GNG11P61952 73 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 LARP1Q6PKG0 1096 aaKnown RBP18.47■□□□□ 0.55
COL17A1-202ENST00000369733 SMAP1Q8IYB5 467 aaPredicted RBP18.47■□□□□ 0.55
COL17A1-202ENST00000369733 GIMAP7Q8NHV1 300 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms