RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 NFATC2IPQ8NCF5 419 aa14.09□□□□□ -0.15
CLRN3-201ENST00000368671 GPBP1L1Q9HC44 474 aaPredicted RBP14.09□□□□□ -0.15
CLRN3-201ENST00000368671 ZBTB47Q9UFB7 747 aaPredicted RBP14.09□□□□□ -0.15
CLRN3-201ENST00000368671 PXDNLA1KZ92 1463 aa14.09□□□□□ -0.15
CLRN3-201ENST00000368671 MYH14Q7Z406 1995 aaKnown RBP14.09□□□□□ -0.15
CLRN3-201ENST00000368671 C10orf71Q711Q0 1435 aa14.07□□□□□ -0.16
CLRN3-201ENST00000368671 GYS1P13807 737 aa14.07□□□□□ -0.16
CLRN3-201ENST00000368671 CCDC87Q9NVE4 849 aa14.07□□□□□ -0.16
CLRN3-201ENST00000368671 KIF7Q2M1P5 1343 aa14.07□□□□□ -0.16
CLRN3-201ENST00000368671 A0A0G2JLW4 131 aa14.06□□□□□ -0.16
CLRN3-201ENST00000368671 CRKLP46109 303 aaKnown RBP14.06□□□□□ -0.16
CLRN3-201ENST00000368671 TGFB2P61812 414 aa14.06□□□□□ -0.16
CLRN3-201ENST00000368671 AMER1Q5JTC6 1135 aaPredicted RBP14.06□□□□□ -0.16
CLRN3-201ENST00000368671 BCS1LQ9Y276 419 aa14.06□□□□□ -0.16
CLRN3-201ENST00000368671 PARP3Q9Y6F1 533 aa14.06□□□□□ -0.16
CLRN3-201ENST00000368671 HMOX1P09601 288 aa14.05□□□□□ -0.16
CLRN3-201ENST00000368671 AKAP4Q5JQC9 854 aa14.05□□□□□ -0.16
CLRN3-201ENST00000368671 BRCA1P38398 1863 aaKnown RBP14.04□□□□□ -0.16
CLRN3-201ENST00000368671 CD44P16070 742 aaKnown RBP14.04□□□□□ -0.16
CLRN3-201ENST00000368671 EVX2Q03828 476 aa14.04□□□□□ -0.16
CLRN3-201ENST00000368671 SRP68Q9UHB9 627 aaKnown RBP14.04□□□□□ -0.16
CLRN3-201ENST00000368671 DPEP1P16444 411 aa14.03□□□□□ -0.16
CLRN3-201ENST00000368671 CC2D1BQ5T0F9 858 aaKnown RBP14.03□□□□□ -0.16
CLRN3-201ENST00000368671 SLC52A2Q9HAB3 445 aa14.03□□□□□ -0.16
CLRN3-201ENST00000368671 LGR6Q9HBX8 967 aa14.03□□□□□ -0.16
CLRN3-201ENST00000368671 USP42Q9H9J4 1324 aaKnown RBP14.03□□□□□ -0.16
CLRN3-201ENST00000368671 ADAMTS7Q9UKP4 1686 aa14.02□□□□□ -0.16
CLRN3-201ENST00000368671 MRC1P22897 1456 aa14.02□□□□□ -0.16
CLRN3-201ENST00000368671 RNMTO43148 476 aaKnown RBP14.02□□□□□ -0.17
CLRN3-201ENST00000368671 FCHSD2O94868 740 aa14.02□□□□□ -0.17
CLRN3-201ENST00000368671 CNGB1Q14028 1251 aaPredicted RBP14.02□□□□□ -0.17
CLRN3-201ENST00000368671 ARHGAP27Q6ZUM4 889 aa14.02□□□□□ -0.17
CLRN3-201ENST00000368671 DNAJC10Q8IXB1 793 aa14.02□□□□□ -0.17
CLRN3-201ENST00000368671 SLC39A6Q13433 755 aa14.01□□□□□ -0.17
CLRN3-201ENST00000368671 INTS5Q6P9B9 1019 aaKnown RBP14.01□□□□□ -0.17
CLRN3-201ENST00000368671 ARFGEF1Q9Y6D6 1849 aa14.01□□□□□ -0.17
CLRN3-201ENST00000368671 GOLGB1Q14789 3259 aaKnown RBP14□□□□□ -0.17
CLRN3-201ENST00000368671 DIAPH1O60610 1272 aaKnown RBP14□□□□□ -0.17
CLRN3-201ENST00000368671 DDR1Q08345 913 aa14□□□□□ -0.17
CLRN3-201ENST00000368671 MTHFSDQ2M296 383 aaKnown RBP14□□□□□ -0.17
CLRN3-201ENST00000368671 KCPQ6ZWJ8 1503 aa14□□□□□ -0.17
CLRN3-201ENST00000368671 PER1O15534 1290 aaPredicted RBP13.99□□□□□ -0.17
CLRN3-201ENST00000368671 USPL1Q5W0Q7 1092 aa13.99□□□□□ -0.17
CLRN3-201ENST00000368671 IFNLR1Q8IU57 520 aaPredicted RBP13.99□□□□□ -0.17
CLRN3-201ENST00000368671 KIF3CO14782 793 aa13.98□□□□□ -0.17
CLRN3-201ENST00000368671 ZPR1O75312 459 aa13.98□□□□□ -0.17
CLRN3-201ENST00000368671 KCNA3P22001 575 aa13.98□□□□□ -0.17
CLRN3-201ENST00000368671 UBR2Q8IWV8 1755 aa13.98□□□□□ -0.17
CLRN3-201ENST00000368671 AFDNP55196 1824 aaKnown RBP13.97□□□□□ -0.17
CLRN3-201ENST00000368671 SOS1Q07889 1333 aaPredicted RBP13.97□□□□□ -0.17
CLRN3-201ENST00000368671 CYP19A1P11511 503 aaPredicted RBP13.97□□□□□ -0.17
CLRN3-201ENST00000368671 HSPA6P17066 643 aa13.97□□□□□ -0.17
CLRN3-201ENST00000368671 CHRNA5P30532 468 aa13.97□□□□□ -0.17
CLRN3-201ENST00000368671 PIM2Q9P1W9 311 aa13.97□□□□□ -0.17
CLRN3-201ENST00000368671 COL15A1P39059 1388 aa13.96□□□□□ -0.17
CLRN3-201ENST00000368671 COL3A1P02461 1466 aaPredicted RBP13.96□□□□□ -0.17
CLRN3-201ENST00000368671 POLRMTO00411 1230 aaKnown RBP13.96□□□□□ -0.17
CLRN3-201ENST00000368671 U2SURPO15042 1029 aaKnown RBP13.96□□□□□ -0.17
CLRN3-201ENST00000368671 NUBP1P53384 320 aa13.96□□□□□ -0.17
CLRN3-201ENST00000368671 SP7Q8TDD2 431 aaPredicted RBP13.96□□□□□ -0.17
CLRN3-201ENST00000368671 ZBTB1Q9Y2K1 713 aa13.96□□□□□ -0.17
CLRN3-201ENST00000368671 TM4SF1P30408 202 aa13.95□□□□□ -0.18
CLRN3-201ENST00000368671 DALRD3Q5D0E6 543 aaKnown RBP13.95□□□□□ -0.18
CLRN3-201ENST00000368671 CANXP27824 592 aaKnown RBP13.94□□□□□ -0.18
CLRN3-201ENST00000368671 C9orf131Q5VYM1 1079 aa13.94□□□□□ -0.18
CLRN3-201ENST00000368671 TTC5Q8N0Z6 440 aa13.94□□□□□ -0.18
CLRN3-201ENST00000368671 NRXN2Q9P2S2 1712 aa13.94□□□□□ -0.18
CLRN3-201ENST00000368671 NARFQ9UHQ1 456 aa13.94□□□□□ -0.18
CLRN3-201ENST00000368671 SIPA1L3O60292 1781 aaPredicted RBP13.94□□□□□ -0.18
CLRN3-201ENST00000368671 NFIXQ14938 502 aa13.93□□□□□ -0.18
CLRN3-201ENST00000368671 RASEFQ8IZ41 740 aa13.93□□□□□ -0.18
CLRN3-201ENST00000368671 VSIG10Q8N0Z9 540 aa13.93□□□□□ -0.18
CLRN3-201ENST00000368671 NMRK2Q9NPI5 230 aa13.93□□□□□ -0.18
CLRN3-201ENST00000368671 DLEC1Q9Y238 1755 aa13.93□□□□□ -0.18
CLRN3-201ENST00000368671 TEFQ10587 303 aa13.92□□□□□ -0.18
CLRN3-201ENST00000368671 GAS2L2Q8NHY3 880 aa13.92□□□□□ -0.18
CLRN3-201ENST00000368671 RNF181Q9P0P0 153 aa13.92□□□□□ -0.18
CLRN3-201ENST00000368671 NPC1L1Q9UHC9 1359 aa13.92□□□□□ -0.18
CLRN3-201ENST00000368671 GNAT3A8MTJ3 354 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 TOMM70O94826 608 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 SERPINB2P05120 415 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 BICDL1Q6ZP65 573 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 ZNF579Q8NAF0 562 aaKnown RBP13.91□□□□□ -0.18
CLRN3-201ENST00000368671 BCL2L12Q9HB09 334 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 SCN7AQ01118 1682 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 SBF1O95248 1867 aa13.91□□□□□ -0.18
CLRN3-201ENST00000368671 STARD3NLO95772 234 aa13.9□□□□□ -0.18
CLRN3-201ENST00000368671 IL17REQ8NFR9 667 aa13.9□□□□□ -0.18
CLRN3-201ENST00000368671 ZNF330Q9Y3S2 320 aaPredicted RBP13.9□□□□□ -0.18
CLRN3-201ENST00000368671 HEG1Q9ULI3 1381 aa13.9□□□□□ -0.18
CLRN3-201ENST00000368671 CARMIL3Q8ND23 1372 aa13.89□□□□□ -0.19
CLRN3-201ENST00000368671 RASSF7Q02833 373 aa13.89□□□□□ -0.19
CLRN3-201ENST00000368671 ZNF790Q6PG37 636 aa13.89□□□□□ -0.19
CLRN3-201ENST00000368671 C16orf71Q8IYS4 520 aaPredicted RBP13.89□□□□□ -0.19
CLRN3-201ENST00000368671 ZNF496Q96IT1 587 aaPredicted RBP13.89□□□□□ -0.19
CLRN3-201ENST00000368671 TNRC6CQ9HCJ0 1690 aaKnown RBP13.88□□□□□ -0.19
CLRN3-201ENST00000368671 A0A087WZG4 1122 aa13.88□□□□□ -0.19
CLRN3-201ENST00000368671 PRKAR2BP31323 418 aa13.88□□□□□ -0.19
CLRN3-201ENST00000368671 C2CD5Q86YS7 1000 aa13.88□□□□□ -0.19
CLRN3-201ENST00000368671 CFAP53Q96M91 514 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms