RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 EFCAB5A4FU69 1503 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.53□□□□□ -0.08
COL6A3-203ENST00000353578 MYO1BO43795 1136 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 CLUL1Q15846 466 aa14.53□□□□□ -0.08
COL6A3-203ENST00000353578 ZSCAN23Q3MJ62 389 aa14.52□□□□□ -0.08
COL6A3-203ENST00000353578 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.52□□□□□ -0.08
COL6A3-203ENST00000353578 LARSQ9P2J5 1176 aaKnown RBP14.52□□□□□ -0.08
COL6A3-203ENST00000353578 BRPF1P55201 1214 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-203ENST00000353578 SPDYE4A6NLX3 237 aa14.52□□□□□ -0.08
COL6A3-203ENST00000353578 FGD6Q6ZV73 1430 aa14.52□□□□□ -0.09
COL6A3-203ENST00000353578 PANK1Q8TE04 598 aa14.52□□□□□ -0.09
COL6A3-203ENST00000353578 LRRC45Q96CN5 670 aa14.52□□□□□ -0.09
COL6A3-203ENST00000353578 GPRASP1Q5JY77 1395 aa14.52□□□□□ -0.09
COL6A3-203ENST00000353578 ZMYM3Q14202 1370 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 DIAPH1O60610 1272 aaKnown RBP14.51□□□□□ -0.09
COL6A3-203ENST00000353578 TSGA10Q9BZW7 698 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 SCLT1Q96NL6 688 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 ANAPC4Q9UJX5 808 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 SPAG1Q07617 926 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 DBN1Q16643 649 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 STMN2Q93045 179 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 SNX21Q969T3 373 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 FERP16591 822 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 RASSF2P50749 326 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 VAV2P52735 878 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 MAATS1Q7Z4T9 603 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 GNAI2P04899 355 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 AFAP1L1Q8TED9 768 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 GSTTP1A0A1W2PQM5 241 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 BLOC1S2Q6QNY1 142 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 CACNA2D4Q7Z3S7 1137 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 FSD1Q9BTV5 496 aa14.51□□□□□ -0.09
COL6A3-203ENST00000353578 MAP4K4O95819 1239 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-203ENST00000353578 ZSCAN16Q9H4T2 348 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-203ENST00000353578 TBC1D2BQ9UPU7 963 aa14.5□□□□□ -0.09
COL6A3-203ENST00000353578 PRDM2Q13029 1718 aa14.5□□□□□ -0.09
COL6A3-203ENST00000353578 SKILP12757 684 aa14.5□□□□□ -0.09
COL6A3-203ENST00000353578 ZNF526Q8TF50 670 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-203ENST00000353578 CTNNBL1Q8WYA6 563 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-203ENST00000353578 ABCC11Q96J66 1382 aa14.5□□□□□ -0.09
COL6A3-203ENST00000353578 TBC1D32Q96NH3 1257 aa14.5□□□□□ -0.09
COL6A3-203ENST00000353578 PPFIA1Q13136 1202 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 ZKSCAN8Q15776 578 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-203ENST00000353578 RPAINQ86UA6 219 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 COG3Q96JB2 828 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 PAXIP1Q6ZW49 1069 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-203ENST00000353578 ZNF165P49910 485 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 GBP7Q8N8V2 638 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-203ENST00000353578 RPGRIP1Q96KN7 1286 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 DDX23Q9BUQ8 820 aaKnown RBP14.49□□□□□ -0.09
COL6A3-203ENST00000353578 RIPK4P57078 832 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 IKBKGQ9Y6K9 419 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 BCL2L13Q9BXK5 485 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 RAI14Q9P0K7 980 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 LRPPRCP42704 1394 aaKnown RBP14.49□□□□□ -0.09
COL6A3-203ENST00000353578 ZSCAN25Q6NSZ9 544 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 KRBA2Q6ZNG9 492 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 NUP88Q99567 741 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-203ENST00000353578 SELENOOQ9BVL4 669 aa14.49□□□□□ -0.09
COL6A3-203ENST00000353578 EHBP1L1Q8N3D4 1523 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 CCDC65Q8IXS2 484 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 GOLGA5Q8TBA6 731 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 CCDC12Q8WUD4 166 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 CASQ2O14958 399 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 WDR97A6NE52 1622 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 HLTFQ14527 1009 aaKnown RBP eCLIP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 TTC12Q9H892 705 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 PDRG1Q9NUG6 133 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 FKBP5Q13451 457 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 RAD50Q92878 1312 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 CEP120Q8N960 986 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 MED4Q9NPJ6 270 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 HFM1A2PYH4 1435 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 HSP90AA5PQ58FG0 334 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 BMP2KLQ5H9B9 411 aa14.48□□□□□ -0.09
COL6A3-203ENST00000353578 BCL11BQ9C0K0 894 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 DNAJC8O75937 253 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 HNRNPMP52272 730 aaKnown RBP eCLIP14.48□□□□□ -0.09
COL6A3-203ENST00000353578 BAG4O95429 457 aaKnown RBP14.47□□□□□ -0.09
COL6A3-203ENST00000353578 ATF7IPQ6VMQ6 1270 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 TSG101Q99816 390 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 GNG11P61952 73 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 BCAP29Q9UHQ4 241 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 RBM26Q5T8P6 1007 aaKnown RBP14.47□□□□□ -0.09
COL6A3-203ENST00000353578 CIB2O75838 187 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 MAP3K21Q5TCX8 1036 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 TBC1D2Q9BYX2 928 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 CCDC113Q9H0I3 377 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 CCDC141Q6ZP82 1450 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 CEP104O60308 925 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 MX1P20591 662 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 CASTP20810 708 aaKnown RBP14.47□□□□□ -0.09
COL6A3-203ENST00000353578 C1orf141Q5JVX7 400 aa14.47□□□□□ -0.09
COL6A3-203ENST00000353578 CCDC160A6NGH7 325 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 CPLX4Q7Z7G2 160 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 TRIM35Q9UPQ4 493 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 NDC80O14777 642 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 NACAP1Q9BZK3 213 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 PPFIA2O75334 1257 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 KRT18P05783 430 aaKnown RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms