RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 HOMEZQ8IX15 550 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 KIAA1524Q8TCG1 905 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 PAXBP1Q9Y5B6 917 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 NCBP1Q09161 790 aaKnown RBP9.8□□□□□ -0.84
ATG4A-201ENST00000343524 RNF20Q5VTR2 975 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 TSC1Q92574 1164 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 SMC4Q9NTJ3 1288 aa9.8□□□□□ -0.84
ATG4A-201ENST00000343524 MAST1Q9Y2H9 1570 aa9.79□□□□□ -0.84
ATG4A-201ENST00000343524 ADCY5O95622 1261 aa9.79□□□□□ -0.84
ATG4A-201ENST00000343524 RGS22Q8NE09 1264 aa9.79□□□□□ -0.84
ATG4A-201ENST00000343524 ZNF397Q8NF99 534 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-201ENST00000343524 L3MBTL3Q96JM7 780 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-201ENST00000343524 ZNF777Q9ULD5 760 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-201ENST00000343524 BRD2P25440 801 aaKnown RBP9.78□□□□□ -0.84
ATG4A-201ENST00000343524 TMEM121BQ9BXQ6 578 aaPredicted RBP9.78□□□□□ -0.84
ATG4A-201ENST00000343524 LNPKQ9C0E8 428 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 ZBTB40Q9NUA8 1239 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 GEMIN8Q9NWZ8 242 aaKnown RBP9.78□□□□□ -0.84
ATG4A-201ENST00000343524 AK9Q5TCS8 1911 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 KIF3BO15066 747 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 SNPHO15079 494 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 SLFNL1Q499Z3 407 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 AXDND1Q5T1B0 1012 aaPredicted RBP9.78□□□□□ -0.84
ATG4A-201ENST00000343524 CCDC183Q5T5S1 534 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 INTS3Q68E01 1043 aaKnown RBP9.78□□□□□ -0.84
ATG4A-201ENST00000343524 KIF18AQ8NI77 898 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 ZFP91Q96JP5 570 aaPredicted RBP9.78□□□□□ -0.84
ATG4A-201ENST00000343524 C8orf37Q96NL8 207 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 BCL2L13Q9BXK5 485 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 TNNQ9UQP3 1299 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 EID1Q9Y6B2 187 aa9.78□□□□□ -0.84
ATG4A-201ENST00000343524 TRIM27P14373 513 aa9.77□□□□□ -0.85
ATG4A-201ENST00000343524 TCP11L2Q8N4U5 519 aa9.77□□□□□ -0.85
ATG4A-201ENST00000343524 CFAP53Q96M91 514 aa9.77□□□□□ -0.85
ATG4A-201ENST00000343524 TTC12Q9H892 705 aaPredicted RBP9.77□□□□□ -0.85
ATG4A-201ENST00000343524 ERVK-7P63135 1459 aa9.77□□□□□ -0.85
ATG4A-201ENST00000343524 NOS1P29475 1434 aa9.77□□□□□ -0.85
ATG4A-201ENST00000343524 IL16Q14005 1332 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 TRIM6-TRIM34B2RNG4 842 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 KDM4AO75164 1064 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 C3orf67Q6ZVT6 689 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 CCDC112Q8NEF3 446 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 TRIM34Q9BYJ4 488 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 TNNT3P45378 269 aaPredicted RBP9.76□□□□□ -0.85
ATG4A-201ENST00000343524 JARID2Q92833 1246 aaPredicted RBP9.76□□□□□ -0.85
ATG4A-201ENST00000343524 ZNF428Q96B54 188 aa9.76□□□□□ -0.85
ATG4A-201ENST00000343524 HTATSF1O43719 755 aaKnown RBP9.75□□□□□ -0.85
ATG4A-201ENST00000343524 IGSF3O75054 1194 aa9.75□□□□□ -0.85
ATG4A-201ENST00000343524 REC8O95072 547 aa9.75□□□□□ -0.85
ATG4A-201ENST00000343524 BRD1O95696 1058 aa9.75□□□□□ -0.85
ATG4A-201ENST00000343524 DPY19L2Q6NUT2 758 aa9.75□□□□□ -0.85
ATG4A-201ENST00000343524 TMEM87AQ8NBN3 555 aa9.75□□□□□ -0.85
ATG4A-201ENST00000343524 INTS4Q96HW7 963 aaKnown RBP9.75□□□□□ -0.85
ATG4A-201ENST00000343524 TET3O43151 1660 aa9.75□□□□□ -0.85
ATG4A-201ENST00000343524 BCL9LQ86UU0 1499 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 CLGNO14967 610 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 RGL3Q3MIN7 710 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 ALDH1L2Q3SY69 923 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 TEX35Q5T0J7 233 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 CABP2Q9NPB3 220 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 MMP14P50281 582 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 ANKRD45Q5TZF3 282 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 TXLNBQ8N3L3 684 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 FAM53CQ9NYF3 392 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 ZDHHC9Q9Y397 364 aa9.74□□□□□ -0.85
ATG4A-201ENST00000343524 FAM177BA6PVY3 158 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 CYP2C19P33261 490 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 PKP1Q13835 747 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 MUM1L1Q5H9M0 696 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 TMEM57Q8N5G2 664 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 RASSF4Q9H2L5 321 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 BRMS1Q9HCU9 246 aa9.73□□□□□ -0.85
ATG4A-201ENST00000343524 CWC15Q9P013 229 aaKnown RBP9.73□□□□□ -0.85
ATG4A-201ENST00000343524 FEZ2Q9UHY8 353 aaPredicted RBP9.73□□□□□ -0.85
ATG4A-201ENST00000343524 TRPC5Q9UL62 973 aaPredicted RBP9.73□□□□□ -0.85
ATG4A-201ENST00000343524 WDR33Q9C0J8 1336 aaKnown RBP9.73□□□□□ -0.85
ATG4A-201ENST00000343524 CAPN2P17655 700 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 MX1P20591 662 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 DEFB132Q7Z7B7 95 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 NOL10Q9BSC4 688 aaKnown RBP9.72□□□□□ -0.85
ATG4A-201ENST00000343524 USP26Q9BXU7 913 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 TMEM2Q9UHN6 1383 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 SBNO2Q9Y2G9 1366 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 CCDC171Q6TFL3 1326 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 ZBTB7CA1YPR0 619 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 BRPF1P55201 1214 aaPredicted RBP9.72□□□□□ -0.85
ATG4A-201ENST00000343524 BMS1Q14692 1282 aaKnown RBP9.72□□□□□ -0.85
ATG4A-201ENST00000343524 GOLGA6L1Q8N7Z2 621 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 MARVELD3Q96A59 401 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 SLC26A8Q96RN1 970 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.72□□□□□ -0.85
ATG4A-201ENST00000343524 PIK3R4Q99570 1358 aa9.72□□□□□ -0.85
ATG4A-201ENST00000343524 ATRNO75882 1429 aa9.71□□□□□ -0.85
ATG4A-201ENST00000343524 PPIP5K1Q6PFW1 1433 aa9.71□□□□□ -0.85
ATG4A-201ENST00000343524 NSD2O96028 1365 aa9.71□□□□□ -0.86
ATG4A-201ENST00000343524 PSDA5PKW4 1024 aaPredicted RBP9.71□□□□□ -0.86
ATG4A-201ENST00000343524 KIF2AO00139 706 aaPredicted RBP9.71□□□□□ -0.86
ATG4A-201ENST00000343524 TPM4P67936 248 aa9.71□□□□□ -0.86
ATG4A-201ENST00000343524 NEUROD2Q15784 382 aa9.71□□□□□ -0.86
ATG4A-201ENST00000343524 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms