RNA–Protein interactions for RNA: ENST00000343483.6

HOXA9-201, Transcript of homeobox A9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA9, Length 2,060 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-201ENST00000343483 USP44Q9H0E7 712 aa23.13■■□□□ 1.29
HOXA9-201ENST00000343483 HSP90AB1P08238 724 aaKnown RBP23.12■■□□□ 1.29
HOXA9-201ENST00000343483 PROSER3Q2NL68 480 aa23.12■■□□□ 1.29
HOXA9-201ENST00000343483 DNAAF4Q8WXU2 420 aa23.12■■□□□ 1.29
HOXA9-201ENST00000343483 STRN4Q9NRL3 753 aa23.12■■□□□ 1.29
HOXA9-201ENST00000343483 UBTFL1P0CB47 393 aaPredicted RBP23.12■■□□□ 1.29
HOXA9-201ENST00000343483 MFAP1P55081 439 aaKnown RBP23.12■■□□□ 1.29
HOXA9-201ENST00000343483 TBC1D32Q96NH3 1257 aa23.12■■□□□ 1.29
HOXA9-201ENST00000343483 LRRFIP2Q9Y608 721 aaKnown RBP23.12■■□□□ 1.29
HOXA9-201ENST00000343483 SCN11AQ9UI33 1791 aa23.11■■□□□ 1.29
HOXA9-201ENST00000343483 PKD1L3Q7Z443 1732 aa23.11■■□□□ 1.29
HOXA9-201ENST00000343483 NGLY1Q96IV0 654 aa23.1■■□□□ 1.29
HOXA9-201ENST00000343483 ADCY9O60503 1353 aa23.1■■□□□ 1.29
HOXA9-201ENST00000343483 SMARCA5O60264 1052 aaPredicted RBP23.1■■□□□ 1.29
HOXA9-201ENST00000343483 EVA1CP58658 441 aa23.1■■□□□ 1.29
HOXA9-201ENST00000343483 PLEKHM2Q8IWE5 1019 aa23.1■■□□□ 1.29
HOXA9-201ENST00000343483 C16orf71Q8IYS4 520 aaPredicted RBP23.1■■□□□ 1.29
HOXA9-201ENST00000343483 AFF2P51816 1311 aa23.1■■□□□ 1.29
HOXA9-201ENST00000343483 BECN1Q14457 450 aa23.09■■□□□ 1.29
HOXA9-201ENST00000343483 N4BP2Q86UW6 1770 aaPredicted RBP23.09■■□□□ 1.29
HOXA9-201ENST00000343483 CABP4P57796 275 aa23.09■■□□□ 1.29
HOXA9-201ENST00000343483 BEND3Q5T5X7 828 aa23.09■■□□□ 1.29
HOXA9-201ENST00000343483 POTEAQ6S8J7 498 aa23.09■■□□□ 1.29
HOXA9-201ENST00000343483 TTC5Q8N0Z6 440 aa23.09■■□□□ 1.29
HOXA9-201ENST00000343483 ZCRB1Q8TBF4 217 aaKnown RBP23.09■■□□□ 1.29
HOXA9-201ENST00000343483 PNMA6EA0A0J9YXQ4 647 aa23.08■■□□□ 1.29
HOXA9-201ENST00000343483 LARP1Q6PKG0 1096 aaKnown RBP23.08■■□□□ 1.29
HOXA9-201ENST00000343483 HYPKQ9NX55 129 aa23.08■■□□□ 1.29
HOXA9-201ENST00000343483 PCDH11XQ9BZA7 1347 aa23.08■■□□□ 1.28
HOXA9-201ENST00000343483 PCDH11YQ9BZA8 1340 aa23.08■■□□□ 1.28
HOXA9-201ENST00000343483 ATP8B2P98198 1209 aa23.07■■□□□ 1.28
HOXA9-201ENST00000343483 ZNF496Q96IT1 587 aaPredicted RBP23.07■■□□□ 1.28
HOXA9-201ENST00000343483 CARD10Q9BWT7 1032 aa23.07■■□□□ 1.28
HOXA9-201ENST00000343483 MRC1P22897 1456 aa23.07■■□□□ 1.28
HOXA9-201ENST00000343483 OTUD7AQ8TE49 926 aaPredicted RBP23.07■■□□□ 1.28
HOXA9-201ENST00000343483 EXOC6BQ9Y2D4 811 aa23.07■■□□□ 1.28
HOXA9-201ENST00000343483 MAP3K2Q9Y2U5 619 aa23.07■■□□□ 1.28
HOXA9-201ENST00000343483 IL2RBP14784 551 aa23.06■■□□□ 1.28
HOXA9-201ENST00000343483 DDX21Q9NR30 783 aaKnown RBP eCLIP23.06■■□□□ 1.28
HOXA9-201ENST00000343483 ILDR2Q71H61 639 aa23.05■■□□□ 1.28
HOXA9-201ENST00000343483 PARP4Q9UKK3 1724 aaKnown RBP23.05■■□□□ 1.28
HOXA9-201ENST00000343483 KSR2Q6VAB6 950 aa23.05■■□□□ 1.28
HOXA9-201ENST00000343483 NBPF7P0C2Y1 421 aaPredicted RBP23.04■■□□□ 1.28
HOXA9-201ENST00000343483 GSPT1P15170 499 aaKnown RBP23.04■■□□□ 1.28
HOXA9-201ENST00000343483 AIMP1Q12904 312 aaKnown RBP23.04■■□□□ 1.28
HOXA9-201ENST00000343483 NFKBIBQ15653 356 aa23.04■■□□□ 1.28
HOXA9-201ENST00000343483 C22orf23Q9BZE7 217 aa23.04■■□□□ 1.28
HOXA9-201ENST00000343483 PDIA6Q15084 440 aa23.04■■□□□ 1.28
HOXA9-201ENST00000343483 FMNL2Q96PY5 1086 aa23.03■■□□□ 1.28
HOXA9-201ENST00000343483 DDX58O95786 925 aaKnown RBP23.02■■□□□ 1.28
HOXA9-201ENST00000343483 SNRPA1P09661 255 aaKnown RBP23.02■■□□□ 1.28
HOXA9-201ENST00000343483 MYL6BP14649 208 aa23.02■■□□□ 1.28
HOXA9-201ENST00000343483 TTC22Q5TAA0 569 aa23.02■■□□□ 1.28
HOXA9-201ENST00000343483 DDX54Q8TDD1 881 aaKnown RBP23.02■■□□□ 1.28
HOXA9-201ENST00000343483 TBC1D9Q6ZT07 1266 aa23.01■■□□□ 1.27
HOXA9-201ENST00000343483 USP21Q9UK80 565 aa23.01■■□□□ 1.27
HOXA9-201ENST00000343483 C5P01031 1676 aa23.01■■□□□ 1.27
HOXA9-201ENST00000343483 LRRCC1Q9C099 1032 aa23.01■■□□□ 1.27
HOXA9-201ENST00000343483 BTG4Q9NY30 223 aa23.01■■□□□ 1.27
HOXA9-201ENST00000343483 FNBP4Q8N3X1 1017 aaPredicted RBP23■■□□□ 1.27
HOXA9-201ENST00000343483 USP16Q9Y5T5 823 aa23■■□□□ 1.27
HOXA9-201ENST00000343483 BCL9LQ86UU0 1499 aa23■■□□□ 1.27
HOXA9-201ENST00000343483 PPP1R42Q7Z4L9 355 aa22.99■■□□□ 1.27
HOXA9-201ENST00000343483 CDC45O75419 566 aa22.99■■□□□ 1.27
HOXA9-201ENST00000343483 ALDH1L1O75891 902 aa22.99■■□□□ 1.27
HOXA9-201ENST00000343483 CWF19L2Q2TBE0 894 aaKnown RBP22.99■■□□□ 1.27
HOXA9-201ENST00000343483 C9orf78Q9NZ63 289 aaPredicted RBP22.99■■□□□ 1.27
HOXA9-201ENST00000343483 IBTKQ9P2D0 1353 aaPredicted RBP22.98■■□□□ 1.27
HOXA9-201ENST00000343483 SSH3Q8TE77 659 aa22.98■■□□□ 1.27
HOXA9-201ENST00000343483 PLCH1Q4KWH8 1693 aa22.98■■□□□ 1.27
HOXA9-201ENST00000343483 SRGAP3O43295 1099 aa22.97■■□□□ 1.27
HOXA9-201ENST00000343483 RIC3Q7Z5B4 369 aa22.97■■□□□ 1.27
HOXA9-201ENST00000343483 ERVV-2B6SEH9 535 aa22.97■■□□□ 1.27
HOXA9-201ENST00000343483 XAGE3Q8WTP9 111 aa22.97■■□□□ 1.27
HOXA9-201ENST00000343483 QTRT2Q9H974 415 aaKnown RBP22.97■■□□□ 1.27
HOXA9-201ENST00000343483 SLIT2O94813 1529 aa22.96■■□□□ 1.27
HOXA9-201ENST00000343483 PIP4K2AP48426 406 aaPredicted RBP22.96■■□□□ 1.27
HOXA9-201ENST00000343483 NKX1-1Q15270 411 aaPredicted RBP22.96■■□□□ 1.27
HOXA9-201ENST00000343483 ZNF772Q68DY9 489 aaPredicted RBP22.96■■□□□ 1.27
HOXA9-201ENST00000343483 COPS6Q7L5N1 327 aa22.96■■□□□ 1.27
HOXA9-201ENST00000343483 LINS1Q8NG48 757 aa22.96■■□□□ 1.27
HOXA9-201ENST00000343483 POLA2Q14181 598 aa22.95■■□□□ 1.26
HOXA9-201ENST00000343483 TBC1D2Q9BYX2 928 aa22.95■■□□□ 1.26
HOXA9-201ENST00000343483 PDE1AP54750 535 aa22.94■■□□□ 1.26
HOXA9-201ENST00000343483 SURF6O75683 361 aaKnown RBP22.94■■□□□ 1.26
HOXA9-201ENST00000343483 SDSP20132 328 aa22.93■■□□□ 1.26
HOXA9-201ENST00000343483 UNC5CLQ8IV45 518 aa22.93■■□□□ 1.26
HOXA9-201ENST00000343483 NEXNQ0ZGT2 675 aa22.92■■□□□ 1.26
HOXA9-201ENST00000343483 TSHZ3Q63HK5 1081 aa22.92■■□□□ 1.26
HOXA9-201ENST00000343483 OSBPL3Q9H4L5 887 aa22.92■■□□□ 1.26
HOXA9-201ENST00000343483 GRM8O00222 908 aa22.91■■□□□ 1.26
HOXA9-201ENST00000343483 RBM25P49756 843 aaKnown RBP22.91■■□□□ 1.26
HOXA9-201ENST00000343483 SLKQ9H2G2 1235 aaPredicted RBP22.91■■□□□ 1.26
HOXA9-201ENST00000343483 COL14A1Q05707 1796 aaKnown RBP22.91■■□□□ 1.26
HOXA9-201ENST00000343483 MX1P20591 662 aa22.91■■□□□ 1.26
HOXA9-201ENST00000343483 LRP10Q7Z4F1 713 aa22.91■■□□□ 1.26
HOXA9-201ENST00000343483 IL1RAPL2Q9NP60 686 aa22.91■■□□□ 1.26
HOXA9-201ENST00000343483 HDAC5Q9UQL6 1122 aa22.91■■□□□ 1.26
HOXA9-201ENST00000343483 RAB11FIP3O75154 756 aa22.9■■□□□ 1.26
HOXA9-201ENST00000343483 IGKV5-2P06315 115 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms