RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SYAP1Q96A49 352 aaPredicted RBP12.23□□□□□ -0.45
USP54-201ENST00000339859 NLRP3Q96P20 1036 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 BRMS1Q9HCU9 246 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 KIDINS220Q9ULH0 1771 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 E9PCH4 1651 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 BRINP3Q76B58 766 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 TMEM57Q8N5G2 664 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 KIF1BPQ96EK5 621 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 WDHD1O75717 1129 aaPredicted RBP12.23□□□□□ -0.45
USP54-201ENST00000339859 XBP1P17861 261 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 CHPF2Q9P2E5 772 aa12.23□□□□□ -0.45
USP54-201ENST00000339859 IL13P35225 146 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 SSH1Q8WYL5 1049 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 RARSP54136 660 aaKnown RBP12.22□□□□□ -0.45
USP54-201ENST00000339859 TPM4P67936 248 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 CEP170BQ9Y4F5 1589 aaPredicted RBP12.22□□□□□ -0.45
USP54-201ENST00000339859 USP6P35125 1406 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 XAGE3Q8WTP9 111 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 TRIM44Q96DX7 344 aaPredicted RBP12.22□□□□□ -0.45
USP54-201ENST00000339859 ATP6V1DQ9Y5K8 247 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 UNC5CLQ8IV45 518 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 ERVV-2B6SEH9 535 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 DZIP1Q86YF9 867 aaKnown RBP12.22□□□□□ -0.45
USP54-201ENST00000339859 FLAD1Q8NFF5 587 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 RSPH6AQ9H0K4 717 aa12.22□□□□□ -0.45
USP54-201ENST00000339859 ANKRD18AQ8IVF6 992 aa12.21□□□□□ -0.45
USP54-201ENST00000339859 THRAP3Q9Y2W1 955 aaKnown RBP12.21□□□□□ -0.45
USP54-201ENST00000339859 PLCB2Q00722 1185 aa12.21□□□□□ -0.45
USP54-201ENST00000339859 RBM17Q96I25 401 aaKnown RBP12.21□□□□□ -0.45
USP54-201ENST00000339859 ZNF287Q9HBT7 754 aa12.21□□□□□ -0.45
USP54-201ENST00000339859 SAFBQ15424 915 aaKnown RBP eCLIP12.21□□□□□ -0.45
USP54-201ENST00000339859 SLC52A2Q9HAB3 445 aa12.21□□□□□ -0.45
USP54-201ENST00000339859 FAM196AQ6ZSG2 479 aa12.21□□□□□ -0.46
USP54-201ENST00000339859 ATP5J2-PTCD1G3V325 749 aa12.21□□□□□ -0.46
USP54-201ENST00000339859 KIAA0232Q92628 1395 aa12.2□□□□□ -0.46
USP54-201ENST00000339859 COPS6Q7L5N1 327 aa12.2□□□□□ -0.46
USP54-201ENST00000339859 CARD10Q9BWT7 1032 aa12.2□□□□□ -0.46
USP54-201ENST00000339859 SPINK5Q9NQ38 1064 aaPredicted RBP12.2□□□□□ -0.46
USP54-201ENST00000339859 F6X3S4 739 aa12.2□□□□□ -0.46
USP54-201ENST00000339859 PRIM1P49642 420 aaKnown RBP12.2□□□□□ -0.46
USP54-201ENST00000339859 PI4KAP2A4QPH2 592 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 SPTY2D1Q68D10 685 aaPredicted RBP12.19□□□□□ -0.46
USP54-201ENST00000339859 PI4KAP1Q8N8J0 262 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 ALDH1L1O75891 902 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 CTNNA3Q9UI47 895 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 INSRP06213 1382 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 RRP12Q5JTH9 1297 aaKnown RBP12.19□□□□□ -0.46
USP54-201ENST00000339859 KSR2Q6VAB6 950 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 PDZRN3Q9UPQ7 1066 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 MCTP1Q6DN14 999 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 TDO2P48775 406 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 ATP2B2Q01814 1243 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 AIDAQ96BJ3 306 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 ABCF2Q9UG63 623 aa12.19□□□□□ -0.46
USP54-201ENST00000339859 MYO1BO43795 1136 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 IDH1O75874 414 aaKnown RBP12.18□□□□□ -0.46
USP54-201ENST00000339859 CCDC43Q96MW1 224 aaKnown RBP12.18□□□□□ -0.46
USP54-201ENST00000339859 CCDC87Q9NVE4 849 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 HDAC9Q9UKV0 1011 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 LRRFIP2Q9Y608 721 aaKnown RBP12.18□□□□□ -0.46
USP54-201ENST00000339859 PIK3C2BO00750 1634 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 USP5P45974 858 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 MAP3K12Q12852 859 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 KRT27Q7Z3Y8 459 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 C16orf71Q8IYS4 520 aaPredicted RBP12.18□□□□□ -0.46
USP54-201ENST00000339859 LDHAL6AQ6ZMR3 332 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 UBE3BQ7Z3V4 1068 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 MTMR7Q9Y216 660 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 SPATA31A3Q5VYP0 1347 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 KIF24Q5T7B8 1368 aa12.18□□□□□ -0.46
USP54-201ENST00000339859 GSTO1P78417 241 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 PARP10Q53GL7 1025 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 JCADQ9P266 1359 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 TNS3Q68CZ2 1445 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 TTLL12Q14166 644 aaPredicted RBP12.17□□□□□ -0.46
USP54-201ENST00000339859 TTF1Q15361 905 aaPredicted RBP12.17□□□□□ -0.46
USP54-201ENST00000339859 ZNF790Q6PG37 636 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 CHD1LQ86WJ1 897 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 FOXD4L1Q9NU39 408 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 AATKQ6ZMQ8 1374 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 LDHCP07864 332 aa12.17□□□□□ -0.46
USP54-201ENST00000339859 CRACR2BQ8N4Y2 399 aaPredicted RBP12.17□□□□□ -0.46
USP54-201ENST00000339859 ARHGAP45Q92619 1136 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 EYA3Q99504 573 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 TULP4Q9NRJ4 1543 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 PTCH1Q13635 1447 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 PDE4AP27815 886 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 CNBD1Q8NA66 436 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 CCDC47Q96A33 483 aaKnown RBP12.16□□□□□ -0.46
USP54-201ENST00000339859 PREX1Q8TCU6 1659 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 ZNF804AQ7Z570 1209 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 WDR17Q8IZU2 1322 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 ZGPATQ8N5A5 531 aaKnown RBP12.16□□□□□ -0.46
USP54-201ENST00000339859 MADDQ8WXG6 1647 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 POLR3DP05423 398 aaPredicted RBP12.16□□□□□ -0.46
USP54-201ENST00000339859 DIP2AQ14689 1571 aa12.16□□□□□ -0.46
USP54-201ENST00000339859 UQCRFS1P1P0C7P4 283 aa12.15□□□□□ -0.46
USP54-201ENST00000339859 IL1RAPL2Q9NP60 686 aa12.15□□□□□ -0.46
USP54-201ENST00000339859 ANKRD2Q9GZV1 360 aa12.15□□□□□ -0.46
USP54-201ENST00000339859 CCDC69A6NI79 296 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms