RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 HS1BP3Q53T59 392 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 NBPF6Q5VWK0 638 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 NBPF4Q96M43 638 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 SPINK5Q9NQ38 1064 aaPredicted RBP7.02□□□□□ -1.29
CSDE1-202ENST00000339438 BRCA2P51587 3418 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 AK9Q5TCS8 1911 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 KIF20AO95235 890 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 MTERF4Q7Z6M4 381 aaKnown RBP7.01□□□□□ -1.29
CSDE1-202ENST00000339438 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.01□□□□□ -1.291e-11■■□□□ 14.1
CSDE1-202ENST00000339438 MAPK8IP3Q9UPT6 1336 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 PLSCR1O15162 318 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 R3HCC1Q9Y3T6 440 aaKnown RBP7.01□□□□□ -1.29
CSDE1-202ENST00000339438 SIPA1L1O43166 1804 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 CLEC17AQ6ZS10 378 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 PHIPQ8WWQ0 1821 aa7.01□□□□□ -1.29
CSDE1-202ENST00000339438 SLX4Q8IY92 1834 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 DDX11L8A8MPP1 907 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 SLFN5Q08AF3 891 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 CYP27B1O15528 508 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 XPCQ01831 940 aaPredicted RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 PSME1Q06323 249 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 JARID2Q92833 1246 aaPredicted RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 TNPO1Q92973 898 aaKnown RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 TRIM44Q96DX7 344 aaPredicted RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 GTPBP4Q9BZE4 634 aaKnown RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 PANK3Q9H999 370 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 CANXP27824 592 aaKnown RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 PTGER2P43116 358 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 EIF4A2Q14240 407 aaKnown RBP7□□□□□ -1.29
CSDE1-202ENST00000339438 ATP2B3Q16720 1220 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 CGNL1Q0VF96 1302 aa7□□□□□ -1.29
CSDE1-202ENST00000339438 HTTP42858 3142 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 PIP4K2BP78356 416 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 RAB3GAP1Q15042 981 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 SPRYD3Q8NCJ5 442 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 LRRC4BQ9NT99 713 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 TRPC5Q9UL62 973 aaPredicted RBP6.99□□□□□ -1.29
CSDE1-202ENST00000339438 ADAMTS8Q9UP79 889 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 C10orf71Q711Q0 1435 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 BCAR3O75815 825 aa6.99□□□□□ -1.29
CSDE1-202ENST00000339438 GTF2F1P35269 517 aaKnown RBP eCLIP6.99□□□□□ -1.291e-7■■■■■ 29.4
CSDE1-202ENST00000339438 PARP14Q460N5 1801 aa6.98□□□□□ -1.29
CSDE1-202ENST00000339438 SMC5Q8IY18 1101 aa6.98□□□□□ -1.29
CSDE1-202ENST00000339438 LETM1O95202 739 aaPredicted RBP6.98□□□□□ -1.29
CSDE1-202ENST00000339438 TNRC18O15417 2968 aaPredicted RBP6.98□□□□□ -1.29
CSDE1-202ENST00000339438 SCN9AQ15858 1988 aa6.98□□□□□ -1.29
CSDE1-202ENST00000339438 NASPP49321 788 aaPredicted RBP6.98□□□□□ -1.29
CSDE1-202ENST00000339438 KCNH5Q8NCM2 988 aa6.98□□□□□ -1.29
CSDE1-202ENST00000339438 PCNTO95613 3336 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 ZBTB22O15209 634 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 HSP90AB1P08238 724 aaKnown RBP6.97□□□□□ -1.29
CSDE1-202ENST00000339438 KIF2CQ99661 725 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 USP21Q9UK80 565 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 OTOFQ9HC10 1997 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 ZNF445P59923 1031 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 BTG4Q9NY30 223 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 ZNF853P0CG23 659 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 CHRM1P11229 460 aaPredicted RBP6.97□□□□□ -1.29
CSDE1-202ENST00000339438 SASS6Q6UVJ0 657 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 EYA1Q99502 592 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 ZKSCAN5Q9Y2L8 839 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 AKAP11Q9UKA4 1901 aa6.97□□□□□ -1.29
CSDE1-202ENST00000339438 CLUAP1Q96AJ1 413 aa6.96□□□□□ -1.29
CSDE1-202ENST00000339438 PCDHB15Q9Y5E8 787 aa6.96□□□□□ -1.29
CSDE1-202ENST00000339438 MYO5AQ9Y4I1 1855 aaKnown RBP6.96□□□□□ -1.3
CSDE1-202ENST00000339438 SNX21Q969T3 373 aa6.96□□□□□ -1.3
CSDE1-202ENST00000339438 QTRT2Q9H974 415 aaKnown RBP6.96□□□□□ -1.3
CSDE1-202ENST00000339438 MAST2Q6P0Q8 1798 aa6.96□□□□□ -1.3
CSDE1-202ENST00000339438 ZNF609O15014 1411 aa6.96□□□□□ -1.3
CSDE1-202ENST00000339438 HSP90AB2PQ58FF8 381 aa6.96□□□□□ -1.3
CSDE1-202ENST00000339438 MYRIPQ8NFW9 859 aa6.96□□□□□ -1.3
CSDE1-202ENST00000339438 EMILIN1Q9Y6C2 1016 aa6.96□□□□□ -1.3
CSDE1-202ENST00000339438 VGLL3A8MV65 326 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 TMF1P82094 1093 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 CCDC125Q86Z20 511 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 SCN4AP35499 1836 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 PDE3AQ14432 1141 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 RBSNQ9H1K0 784 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 CD2BP2O95400 341 aaKnown RBP6.95□□□□□ -1.3
CSDE1-202ENST00000339438 RBM25P49756 843 aaKnown RBP6.95□□□□□ -1.3
CSDE1-202ENST00000339438 GOLGA2Q08379 1002 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 ARID3AQ99856 593 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 C22orf23Q9BZE7 217 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 MYH13Q9UKX3 1938 aa6.95□□□□□ -1.3
CSDE1-202ENST00000339438 MSNP26038 577 aaKnown RBP6.94□□□□□ -1.3
CSDE1-202ENST00000339438 KLHL40Q2TBA0 621 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 SKOR2Q2VWA4 1001 aaPredicted RBP6.94□□□□□ -1.3
CSDE1-202ENST00000339438 SLC20A2Q08357 652 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 TCP11L2Q8N4U5 519 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 CIZ1Q9ULV3 898 aaPredicted RBP6.94□□□□□ -1.3
CSDE1-202ENST00000339438 RBBP6Q7Z6E9 1792 aaKnown RBP6.94□□□□□ -1.3
CSDE1-202ENST00000339438 MCM5P33992 734 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 SEPT12Q8IYM1 358 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 KLHL34Q8N239 644 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 TSC1Q92574 1164 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 PDZRN3Q9UPQ7 1066 aa6.94□□□□□ -1.3
CSDE1-202ENST00000339438 GREB1LQ9C091 1923 aaPredicted RBP6.94□□□□□ -1.3
CSDE1-202ENST00000339438 NUTM2FA1L443 756 aa6.93□□□□□ -1.3
CSDE1-202ENST00000339438 CBX1P83916 185 aa6.93□□□□□ -1.3
CSDE1-202ENST00000339438 PAXIP1Q6ZW49 1069 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms