RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 SPTLC3Q9NUV7 552 aa21.91■■□□□ 1.1
CLSTN3-202ENST00000331148 C17orf53Q8N3J3 647 aaPredicted RBP21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 GTPBP4Q9BZE4 634 aaKnown RBP21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 KIF3AQ9Y496 699 aa21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 SBNO1A3KN83 1393 aa21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 GADD45BO75293 160 aaPredicted RBP21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 FKBP5Q13451 457 aaPredicted RBP21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 PPP4R3BQ5MIZ7 849 aa21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 TTC12Q9H892 705 aaPredicted RBP21.9■■□□□ 1.1
CLSTN3-202ENST00000331148 MARF1Q9Y4F3 1742 aaKnown RBP21.89■■□□□ 1.1
CLSTN3-202ENST00000331148 AMPHP49418 695 aa21.89■■□□□ 1.09
CLSTN3-202ENST00000331148 INTS4Q96HW7 963 aaKnown RBP21.89■■□□□ 1.09
CLSTN3-202ENST00000331148 FLT4P35916 1363 aa21.89■■□□□ 1.09
CLSTN3-202ENST00000331148 DCCP43146 1447 aa21.89■■□□□ 1.09
CLSTN3-202ENST00000331148 ATP2B3Q16720 1220 aa21.89■■□□□ 1.09
CLSTN3-202ENST00000331148 A0A0U1RQG5 324 aaPredicted RBP21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 ADCY5O95622 1261 aa21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 GDPD2Q9HCC8 539 aa21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 RGS12O14924 1447 aa21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 KIF1AQ12756 1690 aa21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 PLEKHG5O94827 1062 aa21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 RTL1A6NKG5 1358 aa21.87■■□□□ 1.09
CLSTN3-202ENST00000331148 FAM177BA6PVY3 158 aa21.86■■□□□ 1.09
CLSTN3-202ENST00000331148 USP48Q86UV5 1035 aa21.86■■□□□ 1.09
CLSTN3-202ENST00000331148 CADPS2Q86UW7 1296 aa21.86■■□□□ 1.09
CLSTN3-202ENST00000331148 BCL2L12Q9HB09 334 aa21.86■■□□□ 1.09
CLSTN3-202ENST00000331148 MST1RQ04912 1400 aa21.85■■□□□ 1.09
CLSTN3-202ENST00000331148 MSH6P52701 1360 aa21.85■■□□□ 1.09
CLSTN3-202ENST00000331148 FOXD4L6Q3SYB3 417 aaPredicted RBP21.85■■□□□ 1.09
CLSTN3-202ENST00000331148 FOXD4L3Q6VB84 417 aaPredicted RBP21.85■■□□□ 1.09
CLSTN3-202ENST00000331148 NOL8Q76FK4 1167 aaKnown RBP21.85■■□□□ 1.09
CLSTN3-202ENST00000331148 LMOD3Q0VAK6 560 aa21.84■■□□□ 1.09
CLSTN3-202ENST00000331148 CCDC183Q5T5S1 534 aa21.84■■□□□ 1.09
CLSTN3-202ENST00000331148 SULT6B1Q6IMI4 303 aa21.84■■□□□ 1.09
CLSTN3-202ENST00000331148 KRT28Q7Z3Y7 464 aa21.84■■□□□ 1.09
CLSTN3-202ENST00000331148 OSBPL3Q9H4L5 887 aa21.84■■□□□ 1.09
CLSTN3-202ENST00000331148 KIF20AO95235 890 aa21.83■■□□□ 1.09
CLSTN3-202ENST00000331148 PALD1Q9ULE6 856 aa21.83■■□□□ 1.09
CLSTN3-202ENST00000331148 MCCP23508 829 aa21.83■■□□□ 1.09
CLSTN3-202ENST00000331148 PDE1AP54750 535 aa21.82■■□□□ 1.08
CLSTN3-202ENST00000331148 ESYT1Q9BSJ8 1104 aa21.82■■□□□ 1.08
CLSTN3-202ENST00000331148 WDR33Q9C0J8 1336 aaKnown RBP21.82■■□□□ 1.08
CLSTN3-202ENST00000331148 HOXC9P31274 260 aa21.82■■□□□ 1.08
CLSTN3-202ENST00000331148 TMEM87AQ8NBN3 555 aa21.82■■□□□ 1.08
CLSTN3-202ENST00000331148 KCNH5Q8NCM2 988 aa21.82■■□□□ 1.08
CLSTN3-202ENST00000331148 LETM1O95202 739 aaPredicted RBP21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 HCLS1P14317 486 aaPredicted RBP21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 ANAPC15P60006 121 aa21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 AEBP1Q8IUX7 1158 aa21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 PDCL2Q8N4E4 241 aa21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 MEIS3Q99687 375 aa21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 KRT24Q2M2I5 525 aa21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 RGPD1P0DJD0 1748 aa21.81■■□□□ 1.08
CLSTN3-202ENST00000331148 FAM83GA6ND36 823 aa21.8■■□□□ 1.08
CLSTN3-202ENST00000331148 ZNF335Q9H4Z2 1342 aaPredicted RBP21.79■■□□□ 1.08
CLSTN3-202ENST00000331148 ARHGEF10O15013 1369 aa21.79■■□□□ 1.08
CLSTN3-202ENST00000331148 KDM4AO75164 1064 aa21.79■■□□□ 1.08
CLSTN3-202ENST00000331148 XIRP1Q702N8 1843 aaKnown RBP21.79■■□□□ 1.08
CLSTN3-202ENST00000331148 RPAP1Q9BWH6 1393 aaPredicted RBP21.79■■□□□ 1.08
CLSTN3-202ENST00000331148 MX1P20591 662 aa21.78■■□□□ 1.08
CLSTN3-202ENST00000331148 LMOD2Q6P5Q4 547 aa21.78■■□□□ 1.08
CLSTN3-202ENST00000331148 TRPM3Q9HCF6 1732 aaPredicted RBP21.78■■□□□ 1.08
CLSTN3-202ENST00000331148 SRCIN1Q9C0H9 1055 aa21.78■■□□□ 1.08
CLSTN3-202ENST00000331148 DIAPH3Q9NSV4 1193 aa21.78■■□□□ 1.08
CLSTN3-202ENST00000331148 KIAA1524Q8TCG1 905 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 ANKRD7Q92527 254 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 NFAT5O94916 1531 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 SPDYE4A6NLX3 237 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 HMMRO75330 724 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 IL17RAQ96F46 866 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 EYA1Q99502 592 aa21.77■■□□□ 1.08
CLSTN3-202ENST00000331148 DLG5Q8TDM6 1919 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 RIOK3O14730 519 aaKnown RBP21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 DCTN1Q14203 1278 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 ANO2Q9NQ90 1003 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 GCP02774 474 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 CHAF1AQ13111 956 aaPredicted RBP21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 TSHZ3Q63HK5 1081 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 UPF3BQ9BZI7 483 aaKnown RBP21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 KCNF1Q9H3M0 494 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 PYCARDQ9ULZ3 195 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 CNPY2Q9Y2B0 182 aa21.76■■□□□ 1.07
CLSTN3-202ENST00000331148 LTN1O94822 1766 aa21.75■■□□□ 1.07
CLSTN3-202ENST00000331148 IP6K1Q92551 441 aa21.75■■□□□ 1.07
CLSTN3-202ENST00000331148 IGSF1Q8N6C5 1336 aa21.75■■□□□ 1.07
CLSTN3-202ENST00000331148 PTPRCP08575 1304 aa21.74■■□□□ 1.07
CLSTN3-202ENST00000331148 SALL3Q9BXA9 1300 aa21.74■■□□□ 1.07
CLSTN3-202ENST00000331148 U2AF2P26368 475 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 UBE2HP62256 183 aa21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 NPHP3Q7Z494 1330 aa21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 KDRP35968 1356 aa21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 KIAA0232Q92628 1395 aa21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 CTIFO43310 598 aaKnown RBP21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 CHMLP26374 656 aa21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 HAP1P54257 671 aaPredicted RBP21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 FUCA2Q9BTY2 467 aa21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 PHRF1Q9P1Y6 1649 aaKnown RBP21.73■■□□□ 1.07
CLSTN3-202ENST00000331148 SLIT3O75094 1523 aa21.72■■□□□ 1.07
CLSTN3-202ENST00000331148 TPM3P06753 285 aa21.72■■□□□ 1.07
CLSTN3-202ENST00000331148 AP5Z1O43299 807 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms