RNA–Protein interactions for RNA: ENST00000330045.11

BRCC3-201, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

TSL 1 (best) BASIC

Gene BRCC3, Length 2,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-201ENST00000330045 MAP3K5Q99683 1374 aa18.73■□□□□ 0.59
BRCC3-201ENST00000330045 LTN1O94822 1766 aa18.73■□□□□ 0.59
BRCC3-201ENST00000330045 USP44Q9H0E7 712 aa18.72■□□□□ 0.59
BRCC3-201ENST00000330045 ANAPC15P60006 121 aa18.72■□□□□ 0.59
BRCC3-201ENST00000330045 ANO2Q9NQ90 1003 aa18.72■□□□□ 0.59
BRCC3-201ENST00000330045 GCP02774 474 aa18.71■□□□□ 0.59
BRCC3-201ENST00000330045 UBTFL1P0CB47 393 aaPredicted RBP18.71■□□□□ 0.59
BRCC3-201ENST00000330045 LRRC59Q96AG4 307 aaKnown RBP18.71■□□□□ 0.58
BRCC3-201ENST00000330045 PALD1Q9ULE6 856 aa18.71■□□□□ 0.58
BRCC3-201ENST00000330045 GPT2Q8TD30 523 aa18.7■□□□□ 0.58
BRCC3-201ENST00000330045 TRPM3Q9HCF6 1732 aaPredicted RBP18.7■□□□□ 0.58
BRCC3-201ENST00000330045 CUL4AQ13619 759 aa18.69■□□□□ 0.58
BRCC3-201ENST00000330045 HDGFL1Q5TGJ6 251 aa18.69■□□□□ 0.58
BRCC3-201ENST00000330045 NBPF6Q5VWK0 638 aa18.69■□□□□ 0.58
BRCC3-201ENST00000330045 NBPF4Q96M43 638 aa18.69■□□□□ 0.58
BRCC3-201ENST00000330045 AOX1Q06278 1338 aa18.69■□□□□ 0.58
BRCC3-201ENST00000330045 XIRP1Q702N8 1843 aaKnown RBP18.69■□□□□ 0.58
BRCC3-201ENST00000330045 UNC5CLQ8IV45 518 aa18.68■□□□□ 0.58
BRCC3-201ENST00000330045 CABLES1Q8TDN4 633 aa18.68■□□□□ 0.58
BRCC3-201ENST00000330045 SSH3Q8TE77 659 aa18.68■□□□□ 0.58
BRCC3-201ENST00000330045 IP6K1Q92551 441 aa18.68■□□□□ 0.58
BRCC3-201ENST00000330045 PHAXQ9H814 394 aaKnown RBP18.68■□□□□ 0.58
BRCC3-201ENST00000330045 IL1RAPL2Q9NP60 686 aa18.68■□□□□ 0.58
BRCC3-201ENST00000330045 AXIN2Q9Y2T1 843 aa18.68■□□□□ 0.58
BRCC3-201ENST00000330045 ZC3H6P61129 1189 aaKnown RBP18.67■□□□□ 0.58
BRCC3-201ENST00000330045 FOXD4L5Q5VV16 416 aaPredicted RBP18.67■□□□□ 0.58
BRCC3-201ENST00000330045 FOXD4L4Q8WXT5 416 aaPredicted RBP18.67■□□□□ 0.58
BRCC3-201ENST00000330045 IL17RAQ96F46 866 aa18.67■□□□□ 0.58
BRCC3-201ENST00000330045 INTS4Q96HW7 963 aaKnown RBP18.67■□□□□ 0.58
BRCC3-201ENST00000330045 RBM27Q9P2N5 1060 aaKnown RBP18.67■□□□□ 0.58
BRCC3-201ENST00000330045 RAB11FIP3O75154 756 aa18.66■□□□□ 0.58
BRCC3-201ENST00000330045 BRD1O95696 1058 aa18.66■□□□□ 0.58
BRCC3-201ENST00000330045 CHAMP1Q96JM3 812 aa18.66■□□□□ 0.58
BRCC3-201ENST00000330045 PRIM1P49642 420 aaKnown RBP18.66■□□□□ 0.58
BRCC3-201ENST00000330045 RBSNQ9H1K0 784 aa18.66■□□□□ 0.58
BRCC3-201ENST00000330045 ARHGEF25Q86VW2 580 aa18.65■□□□□ 0.58
BRCC3-201ENST00000330045 RGPD2P0DJD1 1756 aa18.65■□□□□ 0.58
BRCC3-201ENST00000330045 MED1Q15648 1581 aaPredicted RBP18.65■□□□□ 0.58
BRCC3-201ENST00000330045 EPB41L2O43491 1005 aaKnown RBP18.65■□□□□ 0.58
BRCC3-201ENST00000330045 SURF6O75683 361 aaKnown RBP18.65■□□□□ 0.58
BRCC3-201ENST00000330045 NOL8Q76FK4 1167 aaKnown RBP18.65■□□□□ 0.58
BRCC3-201ENST00000330045 PPP1R42Q7Z4L9 355 aa18.65■□□□□ 0.58
BRCC3-201ENST00000330045 NUTM1Q86Y26 1132 aa18.65■□□□□ 0.58
BRCC3-201ENST00000330045 KCNH5Q8NCM2 988 aa18.65■□□□□ 0.58
BRCC3-201ENST00000330045 CEMIPQ8WUJ3 1361 aa18.64■□□□□ 0.58
BRCC3-201ENST00000330045 CADPS2Q86UW7 1296 aa18.64■□□□□ 0.58
BRCC3-201ENST00000330045 POLA2Q14181 598 aa18.64■□□□□ 0.57
BRCC3-201ENST00000330045 ZSCAN30Q86W11 494 aa18.64■□□□□ 0.57
BRCC3-201ENST00000330045 TMEM63CQ9P1W3 806 aa18.64■□□□□ 0.57
BRCC3-201ENST00000330045 EIF2S2P20042 333 aaKnown RBP18.63■□□□□ 0.57
BRCC3-201ENST00000330045 UPF3BQ9BZI7 483 aaKnown RBP18.63■□□□□ 0.57
BRCC3-201ENST00000330045 KIF1AQ12756 1690 aa18.63■□□□□ 0.57
BRCC3-201ENST00000330045 MBD3O95983 291 aa18.63■□□□□ 0.57
BRCC3-201ENST00000330045 RHPN1Q8TCX5 695 aa18.63■□□□□ 0.57
BRCC3-201ENST00000330045 IL25Q9H293 177 aa18.63■□□□□ 0.57
BRCC3-201ENST00000330045 SLIT3O75094 1523 aa18.63■□□□□ 0.57
BRCC3-201ENST00000330045 LRSAM1Q6UWE0 723 aa18.62■□□□□ 0.57
BRCC3-201ENST00000330045 NSFL1CQ9UNZ2 370 aaKnown RBP18.62■□□□□ 0.57
BRCC3-201ENST00000330045 HSPA4P34932 840 aa18.62■□□□□ 0.57
BRCC3-201ENST00000330045 DCCP43146 1447 aa18.62■□□□□ 0.57
BRCC3-201ENST00000330045 KDM3BQ7LBC6 1761 aa18.61■□□□□ 0.57
BRCC3-201ENST00000330045 SRGAP3O43295 1099 aa18.61■□□□□ 0.57
BRCC3-201ENST00000330045 EIF4A1P60842 406 aaKnown RBP18.61■□□□□ 0.57
BRCC3-201ENST00000330045 BRINP3Q76B58 766 aa18.61■□□□□ 0.57
BRCC3-201ENST00000330045 KIF1BPQ96EK5 621 aa18.61■□□□□ 0.57
BRCC3-201ENST00000330045 PI4K2BQ8TCG2 481 aa18.61■□□□□ 0.57
BRCC3-201ENST00000330045 ALS2Q96Q42 1657 aa18.61■□□□□ 0.57
BRCC3-201ENST00000330045 SYCE3A1L190 88 aa18.6■□□□□ 0.57
BRCC3-201ENST00000330045 MAP4K4O95819 1239 aaPredicted RBP18.6■□□□□ 0.57
BRCC3-201ENST00000330045 NBPF7P0C2Y1 421 aaPredicted RBP18.6■□□□□ 0.57
BRCC3-201ENST00000330045 HOXB7P09629 217 aa18.6■□□□□ 0.57
BRCC3-201ENST00000330045 MSNP26038 577 aaKnown RBP18.6■□□□□ 0.57
BRCC3-201ENST00000330045 CHMP4AQ9BY43 222 aa18.6■□□□□ 0.57
BRCC3-201ENST00000330045 LGR6Q9HBX8 967 aa18.6■□□□□ 0.57
BRCC3-201ENST00000330045 HS1BP3Q53T59 392 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 BEND3Q5T5X7 828 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 ANKRD24Q8TF21 1146 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 DNAAF4Q8WXU2 420 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 PDLIM2Q96JY6 352 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 CHPF2Q9P2E5 772 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 PI4KAP2A4QPH2 592 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 PI4KAP1Q8N8J0 262 aa18.59■□□□□ 0.57
BRCC3-201ENST00000330045 SGSM2O43147 1006 aa18.58■□□□□ 0.57
BRCC3-201ENST00000330045 CHRNA2Q15822 529 aa18.58■□□□□ 0.57
BRCC3-201ENST00000330045 CNTROBQ8N137 903 aa18.58■□□□□ 0.56
BRCC3-201ENST00000330045 RGPD5Q99666 1765 aa18.58■□□□□ 0.56
BRCC3-201ENST00000330045 HSP90AB4PQ58FF6 505 aa18.57■□□□□ 0.56
BRCC3-201ENST00000330045 NPHP3Q7Z494 1330 aa18.57■□□□□ 0.56
BRCC3-201ENST00000330045 RAD50Q92878 1312 aa18.57■□□□□ 0.56
BRCC3-201ENST00000330045 PXDNQ92626 1479 aa18.57■□□□□ 0.56
BRCC3-201ENST00000330045 LMO7Q8WWI1 1683 aa18.57■□□□□ 0.56
BRCC3-201ENST00000330045 PHRF1Q9P1Y6 1649 aaKnown RBP18.56■□□□□ 0.56
BRCC3-201ENST00000330045 WDR33Q9C0J8 1336 aaKnown RBP18.56■□□□□ 0.56
BRCC3-201ENST00000330045 KCNQ3O43525 872 aa18.56■□□□□ 0.56
BRCC3-201ENST00000330045 CRYBG1Q9Y4K1 1723 aa18.55■□□□□ 0.56
BRCC3-201ENST00000330045 TEFQ10587 303 aa18.55■□□□□ 0.56
BRCC3-201ENST00000330045 SLAIN2Q9P270 581 aa18.55■□□□□ 0.56
BRCC3-201ENST00000330045 SNX14Q9Y5W7 946 aa18.55■□□□□ 0.56
BRCC3-201ENST00000330045 PRKCSHP14314 528 aaPredicted RBP18.55■□□□□ 0.56
BRCC3-201ENST00000330045 SYAP1Q96A49 352 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms