RNA–Protein interactions for RNA: ENST00000326195.12

ABCF1-201, Transcript of ATP binding cassette subfamily F member 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene ABCF1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-201ENST00000326195 F6X3S4 739 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 HDGFL1Q5TGJ6 251 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 JARID2Q92833 1246 aaPredicted RBP12.75□□□□□ -0.37
ABCF1-201ENST00000326195 DCAF5Q96JK2 942 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 ZNF772Q68DY9 489 aaPredicted RBP12.75□□□□□ -0.37
ABCF1-201ENST00000326195 SSH1Q8WYL5 1049 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 USP16Q9Y5T5 823 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 BCL9LQ86UU0 1499 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 KRT27Q7Z3Y8 459 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 RGPD2P0DJD1 1756 aa12.75□□□□□ -0.37
ABCF1-201ENST00000326195 A1BGP04217 495 aa12.74□□□□□ -0.37
ABCF1-201ENST00000326195 ZKSCAN2Q63HK3 967 aa12.74□□□□□ -0.37
ABCF1-201ENST00000326195 WDR63Q8IWG1 891 aa12.74□□□□□ -0.37
ABCF1-201ENST00000326195 SLC52A2Q9HAB3 445 aa12.74□□□□□ -0.37
ABCF1-201ENST00000326195 PHF14O94880 888 aa12.74□□□□□ -0.37
ABCF1-201ENST00000326195 ALS2Q96Q42 1657 aa12.74□□□□□ -0.37
ABCF1-201ENST00000326195 RBM6P78332 1123 aaKnown RBP12.73□□□□□ -0.37
ABCF1-201ENST00000326195 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
ABCF1-201ENST00000326195 SLIT3O75094 1523 aa12.73□□□□□ -0.37
ABCF1-201ENST00000326195 G2E3Q7L622 706 aa12.73□□□□□ -0.37
ABCF1-201ENST00000326195 DNAJC10Q8IXB1 793 aa12.73□□□□□ -0.37
ABCF1-201ENST00000326195 KDRP35968 1356 aa12.72□□□□□ -0.37
ABCF1-201ENST00000326195 PCDHB15Q9Y5E8 787 aa12.72□□□□□ -0.37
ABCF1-201ENST00000326195 AHDC1Q5TGY3 1603 aaPredicted RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 ATP6V1AP38606 617 aa12.72□□□□□ -0.37
ABCF1-201ENST00000326195 FKBP5Q13451 457 aaPredicted RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 ZSCAN30Q86W11 494 aa12.72□□□□□ -0.37
ABCF1-201ENST00000326195 STK31Q9BXU1 1019 aa12.72□□□□□ -0.37
ABCF1-201ENST00000326195 PHAXQ9H814 394 aaKnown RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 RARSP54136 660 aaKnown RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 PROSER3Q2NL68 480 aa12.72□□□□□ -0.37
ABCF1-201ENST00000326195 DZIP1LQ8IYY4 767 aaKnown RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 TRMT2AQ8IZ69 625 aaKnown RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 NOB1Q9ULX3 412 aaKnown RBP12.72□□□□□ -0.37
ABCF1-201ENST00000326195 KIF24Q5T7B8 1368 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 TNPO1Q92973 898 aaKnown RBP12.71□□□□□ -0.37
ABCF1-201ENST00000326195 IFT57Q9NWB7 429 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 CHPF2Q9P2E5 772 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 NHSL1Q5SYE7 1610 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 CHL1O00533 1208 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 APBA3O96018 575 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 HSP90AB1P08238 724 aaKnown RBP12.71□□□□□ -0.37
ABCF1-201ENST00000326195 PDZRN3Q9UPQ7 1066 aa12.71□□□□□ -0.37
ABCF1-201ENST00000326195 IPO8O15397 1037 aaKnown RBP12.71□□□□□ -0.38
ABCF1-201ENST00000326195 MFAP1P55081 439 aaKnown RBP12.71□□□□□ -0.38
ABCF1-201ENST00000326195 PDE4CQ08493 712 aa12.71□□□□□ -0.38
ABCF1-201ENST00000326195 BICDL1Q6ZP65 573 aa12.71□□□□□ -0.38
ABCF1-201ENST00000326195 DEFB132Q7Z7B7 95 aa12.71□□□□□ -0.38
ABCF1-201ENST00000326195 WWC3Q9ULE0 1092 aa12.7□□□□□ -0.38
ABCF1-201ENST00000326195 DDX11L8A8MPP1 907 aa12.7□□□□□ -0.38
ABCF1-201ENST00000326195 PPP1R9BQ96SB3 815 aa12.7□□□□□ -0.38
ABCF1-201ENST00000326195 C22orf23Q9BZE7 217 aa12.7□□□□□ -0.38
ABCF1-201ENST00000326195 ZBTB3Q9H5J0 574 aa12.7□□□□□ -0.38
ABCF1-201ENST00000326195 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.7□□□□□ -0.38
ABCF1-201ENST00000326195 TBC1D2BQ9UPU7 963 aa12.7□□□□□ -0.38
ABCF1-201ENST00000326195 VAMP4O75379 141 aa12.69□□□□□ -0.38
ABCF1-201ENST00000326195 DDIT3P35638 169 aa12.69□□□□□ -0.38
ABCF1-201ENST00000326195 SMAP1Q8IYB5 467 aaPredicted RBP12.69□□□□□ -0.38
ABCF1-201ENST00000326195 C1orf115Q9H7X2 142 aa12.69□□□□□ -0.38
ABCF1-201ENST00000326195 UQCRHLA0A096LP55 91 aa12.69□□□□□ -0.38
ABCF1-201ENST00000326195 APBB1O00213 710 aa12.69□□□□□ -0.38
ABCF1-201ENST00000326195 UQCRHP07919 91 aa12.69□□□□□ -0.38
ABCF1-201ENST00000326195 EIF4A1P60842 406 aaKnown RBP12.68□□□□□ -0.38
ABCF1-201ENST00000326195 ATG3Q9NT62 314 aa12.68□□□□□ -0.38
ABCF1-201ENST00000326195 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
ABCF1-201ENST00000326195 NASPP49321 788 aaPredicted RBP12.68□□□□□ -0.38
ABCF1-201ENST00000326195 FOXD4L1Q9NU39 408 aa12.68□□□□□ -0.38
ABCF1-201ENST00000326195 SHPRHQ149N8 1683 aa12.67□□□□□ -0.38
ABCF1-201ENST00000326195 ATP5J2-PTCD1G3V325 749 aa12.67□□□□□ -0.38
ABCF1-201ENST00000326195 FMNL2Q96PY5 1086 aa12.67□□□□□ -0.38
ABCF1-201ENST00000326195 ISY1Q9ULR0 285 aaKnown RBP12.67□□□□□ -0.38
ABCF1-201ENST00000326195 PHRF1Q9P1Y6 1649 aaKnown RBP12.67□□□□□ -0.38
ABCF1-201ENST00000326195 RLBP1P12271 317 aa12.67□□□□□ -0.38
ABCF1-201ENST00000326195 EN1Q05925 392 aaPredicted RBP12.67□□□□□ -0.38
ABCF1-201ENST00000326195 CCDC173Q0VFZ6 552 aa12.67□□□□□ -0.38
ABCF1-201ENST00000326195 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.67□□□□□ -0.38
ABCF1-201ENST00000326195 CCDC85AQ96PX6 553 aaPredicted RBP12.67□□□□□ -0.38
ABCF1-201ENST00000326195 MSNP26038 577 aaKnown RBP12.67□□□□□ -0.38
ABCF1-201ENST00000326195 CCDC27Q2M243 656 aa12.67□□□□□ -0.38
ABCF1-201ENST00000326195 ANKRD26Q9UPS8 1709 aa12.66□□□□□ -0.38
ABCF1-201ENST00000326195 MARF1Q9Y4F3 1742 aaKnown RBP12.66□□□□□ -0.38
ABCF1-201ENST00000326195 NPHP1O15259 732 aa12.66□□□□□ -0.38
ABCF1-201ENST00000326195 GPTP24298 496 aa12.66□□□□□ -0.38
ABCF1-201ENST00000326195 BCL11BQ9C0K0 894 aaPredicted RBP12.66□□□□□ -0.38
ABCF1-201ENST00000326195 THRAP3Q9Y2W1 955 aaKnown RBP12.66□□□□□ -0.38
ABCF1-201ENST00000326195 KDM6AO15550 1401 aaPredicted RBP12.66□□□□□ -0.38
ABCF1-201ENST00000326195 BBXQ8WY36 941 aaPredicted RBP12.66□□□□□ -0.38
ABCF1-201ENST00000326195 DDX19BQ9UMR2 479 aa12.66□□□□□ -0.38
ABCF1-201ENST00000326195 SLIT2O94813 1529 aa12.66□□□□□ -0.38
ABCF1-201ENST00000326195 ZSCAN20P17040 1043 aaPredicted RBP12.65□□□□□ -0.38
ABCF1-201ENST00000326195 BARGINQ6ZT62 677 aa12.65□□□□□ -0.38
ABCF1-201ENST00000326195 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.382e-6■■■■■ 31.6
ABCF1-201ENST00000326195 CCNL1Q9UK58 526 aaPredicted RBP12.65□□□□□ -0.38
ABCF1-201ENST00000326195 GIGYF1O75420 1035 aaPredicted RBP12.65□□□□□ -0.38
ABCF1-201ENST00000326195 CDCA7Q9BWT1 371 aaPredicted RBP12.65□□□□□ -0.38
ABCF1-201ENST00000326195 GTF2E1P29083 439 aaPredicted RBP12.65□□□□□ -0.38
ABCF1-201ENST00000326195 SF3B2Q13435 895 aaKnown RBP12.65□□□□□ -0.38
ABCF1-201ENST00000326195 COPS6Q7L5N1 327 aa12.65□□□□□ -0.38
ABCF1-201ENST00000326195 LOC102724428A0A0B4J2F2 783 aa12.64□□□□□ -0.39
ABCF1-201ENST00000326195 SIK1P57059 783 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms