RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 JAKMIP1Q96N16 626 aaKnown RBP13.46□□□□□ -0.26
VPS39-201ENST00000318006 TESK2Q96S53 571 aa13.46□□□□□ -0.26
VPS39-201ENST00000318006 CFAP100Q494V2 611 aa13.46□□□□□ -0.26
VPS39-201ENST00000318006 SCAND2PQ9GZW5 306 aaPredicted RBP13.46□□□□□ -0.26
VPS39-201ENST00000318006 PAXBP1Q9Y5B6 917 aa13.46□□□□□ -0.26
VPS39-201ENST00000318006 ACEP12821 1306 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 F6X3S4 739 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 EPB41L2O43491 1005 aaKnown RBP13.45□□□□□ -0.26
VPS39-201ENST00000318006 MAP9Q49MG5 647 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 ODF2Q5BJF6 829 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 LARP1Q6PKG0 1096 aaKnown RBP13.45□□□□□ -0.26
VPS39-201ENST00000318006 ANO10Q9NW15 660 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 JAKMIP3Q5VZ66 844 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 PTPRCP08575 1304 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 SMARCA5O60264 1052 aaPredicted RBP13.45□□□□□ -0.26
VPS39-201ENST00000318006 GLRX3O76003 335 aaKnown RBP13.45□□□□□ -0.26
VPS39-201ENST00000318006 MPHOSPH8Q99549 860 aa13.45□□□□□ -0.26
VPS39-201ENST00000318006 LRRFIP2Q9Y608 721 aaKnown RBP13.45□□□□□ -0.26
VPS39-201ENST00000318006 TNRQ92752 1358 aa13.44□□□□□ -0.26
VPS39-201ENST00000318006 CCDC148Q8NFR7 591 aa13.44□□□□□ -0.26
VPS39-201ENST00000318006 ZKSCAN5Q9Y2L8 839 aa13.44□□□□□ -0.26
VPS39-201ENST00000318006 ZSCAN23Q3MJ62 389 aa13.44□□□□□ -0.26
VPS39-201ENST00000318006 CTDP1Q9Y5B0 961 aaPredicted RBP13.44□□□□□ -0.26
VPS39-201ENST00000318006 FKBP4Q02790 459 aaKnown RBP eCLIP13.44□□□□□ -0.26
VPS39-201ENST00000318006 ZSCAN25Q6NSZ9 544 aa13.44□□□□□ -0.26
VPS39-201ENST00000318006 CCDC94Q9BW85 323 aaPredicted RBP13.44□□□□□ -0.26
VPS39-201ENST00000318006 MBIPQ9NS73 344 aa13.44□□□□□ -0.26
VPS39-201ENST00000318006 GPATCH11Q8N954 259 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 DDX11Q96FC9 970 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 DNMT1P26358 1616 aaKnown RBP13.43□□□□□ -0.26
VPS39-201ENST00000318006 SLC3A2P08195 630 aaKnown RBP13.43□□□□□ -0.26
VPS39-201ENST00000318006 MCM3P25205 808 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 CASQ1P31415 396 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 LRSAM1Q6UWE0 723 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 MPRIPQ6WCQ1 1025 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 NACAP1Q9BZK3 213 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 TCEAL9Q9UHQ7 104 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 KDM4AO75164 1064 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 HS1BP3Q53T59 392 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 GSDMDP57764 484 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 FLIIQ13045 1269 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 STIM1Q13586 685 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 KRT32Q14532 448 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 NOLC1Q14978 699 aaKnown RBP eCLIP13.43□□□□□ -0.26
VPS39-201ENST00000318006 DNAAF4Q8WXU2 420 aa13.43□□□□□ -0.26
VPS39-201ENST00000318006 NUTM2BA6NNL0 878 aaPredicted RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 NUTM2EB1AL46 878 aaPredicted RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 NUTM2AQ8IVF1 878 aaPredicted RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 DBF4Q9UBU7 674 aaPredicted RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 STARD3NLO95772 234 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 FERMT3Q86UX7 667 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 PUS7Q96PZ0 661 aaKnown RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 TRMT1Q9NXH9 659 aaKnown RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 ABCC2Q92887 1545 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 ARHGEF12Q9NZN5 1544 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 FAM83GA6ND36 823 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 KIF5CO60282 957 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 PTCD1O75127 700 aaKnown RBP13.42□□□□□ -0.26
VPS39-201ENST00000318006 CTNNA3Q9UI47 895 aa13.42□□□□□ -0.26
VPS39-201ENST00000318006 FBLN1P23142 703 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 SMAP1Q8IYB5 467 aaPredicted RBP13.41□□□□□ -0.26
VPS39-201ENST00000318006 MTMR7Q9Y216 660 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 POTEB2H3BUK9 544 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 ABCC10Q5T3U5 1492 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 CTAGE5O15320 804 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 MICALCLQ6ZW33 695 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 DYDC1Q8WWB3 177 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 DDX19AQ9NUU7 478 aaKnown RBP13.41□□□□□ -0.26
VPS39-201ENST00000318006 UHRF1BP1LA0JNW5 1464 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 CASTP20810 708 aaKnown RBP13.41□□□□□ -0.26
VPS39-201ENST00000318006 KIF4BQ2VIQ3 1234 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 CEP135Q66GS9 1140 aa13.41□□□□□ -0.26
VPS39-201ENST00000318006 POLR3AO14802 1390 aaPredicted RBP13.4□□□□□ -0.26
VPS39-201ENST00000318006 LMAN1P49257 510 aa13.4□□□□□ -0.26
VPS39-201ENST00000318006 CCDC83Q8IWF9 413 aa13.4□□□□□ -0.26
VPS39-201ENST00000318006 RBM27Q9P2N5 1060 aaKnown RBP13.4□□□□□ -0.26
VPS39-201ENST00000318006 IGHDP01880 384 aa13.4□□□□□ -0.26
VPS39-201ENST00000318006 IPO4Q8TEX9 1081 aaKnown RBP13.4□□□□□ -0.26
VPS39-201ENST00000318006 EIF2AK4Q9P2K8 1649 aaKnown RBP13.4□□□□□ -0.26
VPS39-201ENST00000318006 TAX1BP1Q86VP1 789 aa13.4□□□□□ -0.26
VPS39-201ENST00000318006 SH2B1Q9NRF2 756 aaPredicted RBP13.4□□□□□ -0.26
VPS39-201ENST00000318006 HYPKQ9NX55 129 aa13.4□□□□□ -0.26
VPS39-201ENST00000318006 ZFYVE27Q5T4F4 411 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 TRIM22Q8IYM9 498 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 SMARCC1Q92922 1105 aaPredicted RBP13.39□□□□□ -0.27
VPS39-201ENST00000318006 MYD88Q99836 296 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 PZPP20742 1482 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 TOP1P11387 765 aaKnown RBP13.39□□□□□ -0.27
VPS39-201ENST00000318006 GTF2A1P52655 376 aaPredicted RBP13.39□□□□□ -0.27
VPS39-201ENST00000318006 SNW1Q13573 536 aaKnown RBP13.39□□□□□ -0.27
VPS39-201ENST00000318006 KIAA1328Q86T90 577 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 ARHGAP45Q92619 1136 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 NEFHP12036 1026 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 BMP2KLQ5H9B9 411 aa13.39□□□□□ -0.27
VPS39-201ENST00000318006 DHX37Q8IY37 1157 aaKnown RBP13.39□□□□□ -0.27
VPS39-201ENST00000318006 CCDC85AQ96PX6 553 aaPredicted RBP13.39□□□□□ -0.27
VPS39-201ENST00000318006 ENOX2Q16206 610 aaKnown RBP13.38□□□□□ -0.27
VPS39-201ENST00000318006 TMOD3Q9NYL9 352 aa13.38□□□□□ -0.27
VPS39-201ENST00000318006 CCDC171Q6TFL3 1326 aa13.38□□□□□ -0.27
VPS39-201ENST00000318006 TTC21AQ8NDW8 1320 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms