RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SOS1Q07889 1333 aaPredicted RBP16.21■□□□□ 0.19
SKA3-202ENST00000314759 HDGFP51858 240 aaKnown RBP16.21■□□□□ 0.19
SKA3-202ENST00000314759 ZNF710Q8N1W2 664 aa16.21■□□□□ 0.19
SKA3-202ENST00000314759 TMEM87AQ8NBN3 555 aa16.21■□□□□ 0.19
SKA3-202ENST00000314759 CCDC94Q9BW85 323 aaPredicted RBP16.21■□□□□ 0.19
SKA3-202ENST00000314759 XRN1Q8IZH2 1706 aaKnown RBP16.21■□□□□ 0.19
SKA3-202ENST00000314759 SSH3Q8TE77 659 aa16.21■□□□□ 0.18
SKA3-202ENST00000314759 CNPY2Q9Y2B0 182 aa16.21■□□□□ 0.18
SKA3-202ENST00000314759 CEP170BQ9Y4F5 1589 aaPredicted RBP16.2■□□□□ 0.18
SKA3-202ENST00000314759 IGSF1Q8N6C5 1336 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 UBTFL1P0CB47 393 aaPredicted RBP16.2■□□□□ 0.18
SKA3-202ENST00000314759 FAM184AQ8NB25 1140 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 MYRIPQ8NFW9 859 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 FLT4P35916 1363 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.2■□□□□ 0.18
SKA3-202ENST00000314759 UVSSAQ2YD98 709 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 PI4K2BQ8TCG2 481 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 USP25Q9UHP3 1055 aa16.2■□□□□ 0.18
SKA3-202ENST00000314759 FAM69CQ0P6D2 419 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 TTC14Q96N46 770 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 SNX14Q9Y5W7 946 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 SBNO1A3KN83 1393 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 RAD50Q92878 1312 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 DIP2BQ9P265 1576 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 SGSM2O43147 1006 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 HTATSF1O43719 755 aaKnown RBP16.19■□□□□ 0.18
SKA3-202ENST00000314759 CCDC183Q5T5S1 534 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 LARP6Q9BRS8 491 aaKnown RBP16.19■□□□□ 0.18
SKA3-202ENST00000314759 TOPAZ1Q8N9V7 1692 aa16.19■□□□□ 0.18
SKA3-202ENST00000314759 ZSCAN22P10073 491 aaPredicted RBP16.18■□□□□ 0.18
SKA3-202ENST00000314759 TPRNQ4KMQ1 711 aa16.18■□□□□ 0.18
SKA3-202ENST00000314759 RASEFQ8IZ41 740 aa16.18■□□□□ 0.18
SKA3-202ENST00000314759 TTC12Q9H892 705 aaPredicted RBP16.18■□□□□ 0.18
SKA3-202ENST00000314759 GNAT3A8MTJ3 354 aa16.18■□□□□ 0.18
SKA3-202ENST00000314759 SURF6O75683 361 aaKnown RBP16.18■□□□□ 0.18
SKA3-202ENST00000314759 AMPHP49418 695 aa16.18■□□□□ 0.18
SKA3-202ENST00000314759 PPP1R42Q7Z4L9 355 aa16.18■□□□□ 0.18
SKA3-202ENST00000314759 ZSCAN20P17040 1043 aaPredicted RBP16.18■□□□□ 0.18
SKA3-202ENST00000314759 AK2P54819 239 aa16.18■□□□□ 0.18
SKA3-202ENST00000314759 LSG1Q9H089 658 aaKnown RBP16.18■□□□□ 0.18
SKA3-202ENST00000314759 FAM208AQ9UK61 1670 aaKnown RBP16.18■□□□□ 0.18
SKA3-202ENST00000314759 SYT1P21579 422 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 RUFY3Q7L099 469 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 IL17REQ8NFR9 667 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 RHPN1Q8TCX5 695 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 STX6O43752 255 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 RAB11FIP3O75154 756 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 ADCY5O95622 1261 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 HCLS1P14317 486 aaPredicted RBP16.17■□□□□ 0.18
SKA3-202ENST00000314759 NOLC1Q14978 699 aaKnown RBP eCLIP16.17■□□□□ 0.18
SKA3-202ENST00000314759 PHAXQ9H814 394 aaKnown RBP16.17■□□□□ 0.18
SKA3-202ENST00000314759 PODXL2Q9NZ53 605 aa16.17■□□□□ 0.18
SKA3-202ENST00000314759 POLA2Q14181 598 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 ADAMTS13Q76LX8 1427 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 UBE2HP62256 183 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 CBX1P83916 185 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 PIBF1Q8WXW3 757 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 LIMCH1Q9UPQ0 1083 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 TMEM2Q9UHN6 1383 aa16.16■□□□□ 0.18
SKA3-202ENST00000314759 FMN2Q9NZ56 1722 aa16.15■□□□□ 0.18
SKA3-202ENST00000314759 TTC21AQ8NDW8 1320 aa16.15■□□□□ 0.18
SKA3-202ENST00000314759 DMTNQ08495 405 aa16.15■□□□□ 0.18
SKA3-202ENST00000314759 LETM1O95202 739 aaPredicted RBP16.15■□□□□ 0.18
SKA3-202ENST00000314759 PXDNLA1KZ92 1463 aa16.15■□□□□ 0.18
SKA3-202ENST00000314759 F13A1P00488 732 aa16.14■□□□□ 0.17
SKA3-202ENST00000314759 CPA1P15085 419 aa16.14■□□□□ 0.17
SKA3-202ENST00000314759 TAF7Q15545 349 aaPredicted RBP16.14■□□□□ 0.17
SKA3-202ENST00000314759 CWC27Q6UX04 472 aaKnown RBP16.14■□□□□ 0.17
SKA3-202ENST00000314759 SPG7Q9UQ90 795 aa16.14■□□□□ 0.17
SKA3-202ENST00000314759 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.14■□□□□ 0.17
SKA3-202ENST00000314759 LRRC37A3O60309 1634 aa16.14■□□□□ 0.17
SKA3-202ENST00000314759 SRGAP3O43295 1099 aa16.14■□□□□ 0.17
SKA3-202ENST00000314759 FIBPO43427 364 aa16.14■□□□□ 0.17
SKA3-202ENST00000314759 LARGE1O95461 756 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 ATP2B3Q16720 1220 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 HDGFL1Q5TGJ6 251 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 CNTROBQ8N137 903 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 KIF1BPQ96EK5 621 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 SMC3Q9UQE7 1217 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 CACNA1FO60840 1977 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 NBPF7P0C2Y1 421 aaPredicted RBP16.13■□□□□ 0.17
SKA3-202ENST00000314759 CYB5RLQ6IPT4 315 aa16.13■□□□□ 0.17
SKA3-202ENST00000314759 ESF1Q9H501 851 aaKnown RBP16.13■□□□□ 0.17
SKA3-202ENST00000314759 DTNBO60941 627 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 KDM4AO75164 1064 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 FUCA2Q9BTY2 467 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 PRIMPOLQ96LW4 560 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 HYPKQ9NX55 129 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 MAP3K5Q99683 1374 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 CASTP20810 708 aaKnown RBP16.12■□□□□ 0.17
SKA3-202ENST00000314759 GIMAP6Q6P9H5 292 aa16.12■□□□□ 0.17
SKA3-202ENST00000314759 N4BP2Q86UW6 1770 aaPredicted RBP16.11■□□□□ 0.17
SKA3-202ENST00000314759 LTKP29376 864 aa16.11■□□□□ 0.17
SKA3-202ENST00000314759 PPP4R3BQ5MIZ7 849 aa16.11■□□□□ 0.17
SKA3-202ENST00000314759 NGDNQ8NEJ9 315 aaKnown RBP16.11■□□□□ 0.17
SKA3-202ENST00000314759 ATP6V1DQ9Y5K8 247 aa16.11■□□□□ 0.17
SKA3-202ENST00000314759 TSPOAP1O95153 1857 aa16.11■□□□□ 0.17
SKA3-202ENST00000314759 TNRQ92752 1358 aa16.11■□□□□ 0.17
SKA3-202ENST00000314759 HMGN5P82970 282 aaKnown RBP16.11■□□□□ 0.17
SKA3-202ENST00000314759 BABAM1Q9NWV8 329 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms