RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 NBR1Q14596 966 aa8.14□□□□□ -1.11
USP47-201ENST00000305481 TTC22Q5TAA0 569 aa8.14□□□□□ -1.11
USP47-201ENST00000305481 ZNF496Q96IT1 587 aaPredicted RBP8.14□□□□□ -1.11
USP47-201ENST00000305481 TOM1L2Q6ZVM7 507 aa8.14□□□□□ -1.11
USP47-201ENST00000305481 DDX21Q9NR30 783 aaKnown RBP eCLIP8.13□□□□□ -1.11
USP47-201ENST00000305481 MAP3K2Q9Y2U5 619 aa8.13□□□□□ -1.11
USP47-201ENST00000305481 IBTKQ9P2D0 1353 aaPredicted RBP8.13□□□□□ -1.11
USP47-201ENST00000305481 LARP1Q6PKG0 1096 aaKnown RBP8.13□□□□□ -1.11
USP47-201ENST00000305481 KSR2Q6VAB6 950 aa8.13□□□□□ -1.11
USP47-201ENST00000305481 SSH3Q8TE77 659 aa8.13□□□□□ -1.11
USP47-201ENST00000305481 HYPKQ9NX55 129 aa8.13□□□□□ -1.11
USP47-201ENST00000305481 SALL3Q9BXA9 1300 aa8.13□□□□□ -1.11
USP47-201ENST00000305481 RBM25P49756 843 aaKnown RBP8.12□□□□□ -1.11
USP47-201ENST00000305481 LRP10Q7Z4F1 713 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 ZCRB1Q8TBF4 217 aaKnown RBP8.12□□□□□ -1.11
USP47-201ENST00000305481 CARD10Q9BWT7 1032 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 USP16Q9Y5T5 823 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 POLA2Q14181 598 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 PPP1R42Q7Z4L9 355 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 TBC1D2Q9BYX2 928 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 PARP4Q9UKK3 1724 aaKnown RBP8.12□□□□□ -1.11
USP47-201ENST00000305481 GLI3P10071 1580 aa8.12□□□□□ -1.11
USP47-201ENST00000305481 CDC45O75419 566 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 HSP90AB1P08238 724 aaKnown RBP8.11□□□□□ -1.11
USP47-201ENST00000305481 SDSP20132 328 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 OSBPL3Q9H4L5 887 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 PDE1AP54750 535 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 CABP4P57796 275 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 CWF19L2Q2TBE0 894 aaKnown RBP8.11□□□□□ -1.11
USP47-201ENST00000305481 KIF2CQ99661 725 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 LRRCC1Q9C099 1032 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 STRN4Q9NRL3 753 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 SNRPA1P09661 255 aaKnown RBP8.11□□□□□ -1.11
USP47-201ENST00000305481 AIMP1Q12904 312 aaKnown RBP8.11□□□□□ -1.11
USP47-201ENST00000305481 PCDH11XQ9BZA7 1347 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 PCDH11YQ9BZA8 1340 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 SHANK3Q9BYB0 1731 aa8.11□□□□□ -1.11
USP47-201ENST00000305481 MYL6BP14649 208 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 IL2RBP14784 551 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 PIP4K2AP48426 406 aaPredicted RBP8.1□□□□□ -1.11
USP47-201ENST00000305481 NKX1-1Q15270 411 aaPredicted RBP8.1□□□□□ -1.11
USP47-201ENST00000305481 TSHZ3Q63HK5 1081 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 ALDH1L1O75891 902 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 SRGAP3O43295 1099 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 IGKV5-2P06315 115 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 BECN1Q14457 450 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 TTC5Q8N0Z6 440 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 KAZALD1Q96I82 304 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 FMNL2Q96PY5 1086 aa8.1□□□□□ -1.11
USP47-201ENST00000305481 EVA1CP58658 441 aa8.09□□□□□ -1.11
USP47-201ENST00000305481 COPS6Q7L5N1 327 aa8.09□□□□□ -1.11
USP47-201ENST00000305481 LINS1Q8NG48 757 aa8.09□□□□□ -1.11
USP47-201ENST00000305481 XAGE3Q8WTP9 111 aa8.09□□□□□ -1.11
USP47-201ENST00000305481 UTYO14607 1347 aa8.09□□□□□ -1.11
USP47-201ENST00000305481 MTX1Q13505 466 aa8.09□□□□□ -1.11
USP47-201ENST00000305481 DDX54Q8TDD1 881 aaKnown RBP8.09□□□□□ -1.11
USP47-201ENST00000305481 ERVV-2B6SEH9 535 aa8.09□□□□□ -1.12
USP47-201ENST00000305481 SURF6O75683 361 aaKnown RBP8.09□□□□□ -1.12
USP47-201ENST00000305481 ANTXR1Q9H6X2 564 aa8.09□□□□□ -1.12
USP47-201ENST00000305481 IL1RAPL2Q9NP60 686 aa8.09□□□□□ -1.12
USP47-201ENST00000305481 BTG4Q9NY30 223 aa8.09□□□□□ -1.12
USP47-201ENST00000305481 ROBO1Q9Y6N7 1651 aa8.08□□□□□ -1.12
USP47-201ENST00000305481 TUBGCP6Q96RT7 1819 aa8.08□□□□□ -1.12
USP47-201ENST00000305481 DDX58O95786 925 aaKnown RBP8.08□□□□□ -1.12
USP47-201ENST00000305481 MX1P20591 662 aa8.08□□□□□ -1.12
USP47-201ENST00000305481 C9orf78Q9NZ63 289 aaPredicted RBP8.08□□□□□ -1.12
USP47-201ENST00000305481 STAP2Q9UGK3 403 aa8.08□□□□□ -1.12
USP47-201ENST00000305481 RIC3Q7Z5B4 369 aa8.08□□□□□ -1.12
USP47-201ENST00000305481 USP35Q9P2H5 1018 aa8.08□□□□□ -1.12
USP47-201ENST00000305481 UBR2Q8IWV8 1755 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 KCPQ6ZWJ8 1503 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 NBPF26B4DH59 902 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 GRM8O00222 908 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 RAB11FIP3O75154 756 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 NBPF14Q5TI25 921 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 NBPF10Q6P3W6 841 aaKnown RBP8.07□□□□□ -1.12
USP47-201ENST00000305481 NBPF15Q8N660 670 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 RHPN1Q8TCX5 695 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 LTBP4Q8N2S1 1624 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 NEURL1BA8MQ27 555 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 ANKRD13DQ6ZTN6 518 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 SUCLG2Q96I99 432 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 PAPPAQ13219 1627 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 AEBP2Q6ZN18 517 aaPredicted RBP8.07□□□□□ -1.12
USP47-201ENST00000305481 NUTM1Q86Y26 1132 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 UBE2Q2Q8WVN8 375 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 METTL22Q9BUU2 404 aaPredicted RBP8.07□□□□□ -1.12
USP47-201ENST00000305481 USP26Q9BXU7 913 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 TOGARAM1Q9Y4F4 1720 aa8.07□□□□□ -1.12
USP47-201ENST00000305481 AHDC1Q5TGY3 1603 aaPredicted RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 GCKRQ14397 625 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 NFKBIBQ15653 356 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 SLKQ9H2G2 1235 aaPredicted RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 UNC5CLQ8IV45 518 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 MYD88Q99836 296 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 RBM42Q9BTD8 480 aaKnown RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 BICC1Q9H694 974 aaKnown RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 PA2G4Q9UQ80 394 aaKnown RBP8.06□□□□□ -1.12
USP47-201ENST00000305481 LAMB4A4D0S4 1761 aa8.06□□□□□ -1.12
USP47-201ENST00000305481 COL16A1Q07092 1604 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms