RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 POLD1P28340 1107 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 LMTK3Q96Q04 1460 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 EIF5P55010 431 aaKnown RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 CC2D2AQ9P2K1 1620 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 AKAP2Q9Y2D5 859 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 BTG4Q9NY30 223 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 NSFL1CQ9UNZ2 370 aaKnown RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 WASLO00401 505 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-201ENST00000303354 SIRT1Q96EB6 747 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 AXDND1Q5T1B0 1012 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-201ENST00000303354 IFNL2Q8IZJ0 200 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 ZNHIT6Q9NWK9 470 aaKnown RBP9.13□□□□□ -0.95
SCN9A-201ENST00000303354 MVPQ14764 893 aaKnown RBP9.13□□□□□ -0.95
SCN9A-201ENST00000303354 FILIP1Q7Z7B0 1213 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 RGS22Q8NE09 1264 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 SORBS3O60504 671 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 STIM1Q13586 685 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 HSP90AA2PQ14568 343 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-201ENST00000303354 FAM182BQ5T319 152 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 FNBP4Q8N3X1 1017 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-201ENST00000303354 STX8Q9UNK0 236 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 MAP7D2Q96T17 732 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 SLC12A7Q9Y666 1083 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 CHST3Q7LGC8 479 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 MIGA1Q8NAN2 632 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 BICD1Q96G01 975 aa9.13□□□□□ -0.95
SCN9A-201ENST00000303354 GOLGA8AA7E2F4 631 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 GOLGA8BA8MQT2 603 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 NASPP49321 788 aaPredicted RBP9.12□□□□□ -0.95
SCN9A-201ENST00000303354 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.12□□□□□ -0.95
SCN9A-201ENST00000303354 HSP90AA4PQ58FG1 418 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 C20orf194Q5TEA3 1177 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 EIF6P56537 245 aaKnown RBP9.12□□□□□ -0.95
SCN9A-201ENST00000303354 ATP2B3Q16720 1220 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 CCDC113Q9H0I3 377 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 PI4KAP2A4QPH2 592 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 PI4KAP1Q8N8J0 262 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 PPP1R42Q7Z4L9 355 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 GDPD2Q9HCC8 539 aa9.12□□□□□ -0.95
SCN9A-201ENST00000303354 CWC25Q9NXE8 425 aaPredicted RBP9.11□□□□□ -0.95
SCN9A-201ENST00000303354 DMRT2Q9Y5R5 561 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 BIN1O00499 593 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 NBPF14Q5TI25 921 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 TCERG1LQ5VWI1 586 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 TFIP11Q9UBB9 837 aaKnown RBP9.11□□□□□ -0.95
SCN9A-201ENST00000303354 DNAAF4Q8WXU2 420 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 SSRP1Q08945 709 aaKnown RBP9.11□□□□□ -0.95
SCN9A-201ENST00000303354 CHPF2Q9P2E5 772 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 CYP7A1P22680 504 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 TCEANC2Q96MN5 208 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 KAT14Q9H8E8 782 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 MSH6P52701 1360 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 KIAA1328Q86T90 577 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 GOPCQ9HD26 462 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 CTNNA3Q9UI47 895 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 NFATC2IPQ8NCF5 419 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 ATXN8OSP0DMR3 200 aa9.11□□□□□ -0.95
SCN9A-201ENST00000303354 PA2G4Q9UQ80 394 aaKnown RBP9.11□□□□□ -0.95
SCN9A-201ENST00000303354 CTCFLQ8NI51 663 aaPredicted RBP9.1□□□□□ -0.95
SCN9A-201ENST00000303354 APBA3O96018 575 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 GPR162Q16538 588 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 DZIP3Q86Y13 1208 aaKnown RBP9.1□□□□□ -0.95
SCN9A-201ENST00000303354 ANKRD18AQ8IVF6 992 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 DTNBO60941 627 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 COPS6Q7L5N1 327 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 MICU3Q86XE3 530 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 FERMT2Q96AC1 680 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 COMMD10Q9Y6G5 202 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 ANAPC15P60006 121 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 KIF21BO75037 1637 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 GNPATO15228 680 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 FCHSD2O94868 740 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 TSPY3P0CV98 308 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 TSPY8P0CW00 308 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 IDEP14735 1019 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 IQCA1Q86XH1 822 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 TMEM67Q5HYA8 995 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 SYCP3Q8IZU3 236 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 SLC26A6Q9BXS9 759 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 ZKSCAN3Q9BRR0 538 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 XAGE3Q8WTP9 111 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 PLIN2Q99541 437 aa9.1□□□□□ -0.95
SCN9A-201ENST00000303354 RXRAP19793 462 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 RDXP35241 583 aaKnown RBP9.09□□□□□ -0.95
SCN9A-201ENST00000303354 KIF1BPQ96EK5 621 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 SLC4A4Q9Y6R1 1079 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 CALM1P0DP23 149 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 CALM2P0DP24 149 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 CALM3P0DP25 149 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 OGFOD1Q8N543 542 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 CDC5LQ99459 802 aaKnown RBP9.09□□□□□ -0.95
SCN9A-201ENST00000303354 RTCBQ9Y3I0 505 aaKnown RBP9.09□□□□□ -0.95
SCN9A-201ENST00000303354 CCDC178Q5BJE1 867 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 PROCA1Q8NCQ7 364 aaPredicted RBP9.09□□□□□ -0.95
SCN9A-201ENST00000303354 BCCIPQ9P287 314 aaKnown RBP eCLIP9.09□□□□□ -0.95
SCN9A-201ENST00000303354 ANKRD1Q15327 319 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 HEATR3Q7Z4Q2 680 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 PLB1Q6P1J6 1458 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 PRC1O43663 620 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 MX1P20591 662 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms