RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PXDNLA1KZ92 1463 aa17.83■□□□□ 0.44
SS18-201ENST00000269137 F6X3S4 739 aa17.82■□□□□ 0.44
SS18-201ENST00000269137 PDIA6Q15084 440 aa17.82■□□□□ 0.44
SS18-201ENST00000269137 RWDD1Q9H446 243 aaPredicted RBP17.82■□□□□ 0.44
SS18-201ENST00000269137 BCL9O00512 1426 aa17.82■□□□□ 0.44
SS18-201ENST00000269137 HDAC1Q13547 482 aaPredicted RBP17.82■□□□□ 0.44
SS18-201ENST00000269137 FAM98CQ17RN3 349 aaKnown RBP17.82■□□□□ 0.44
SS18-201ENST00000269137 MARCH10Q8NA82 808 aaPredicted RBP17.82■□□□□ 0.44
SS18-201ENST00000269137 PROSER3Q2NL68 480 aa17.81■□□□□ 0.44
SS18-201ENST00000269137 USP16Q9Y5T5 823 aa17.81■□□□□ 0.44
SS18-201ENST00000269137 KAT6BQ8WYB5 2073 aa17.81■□□□□ 0.44
SS18-201ENST00000269137 LAMB4A4D0S4 1761 aa17.81■□□□□ 0.44
SS18-201ENST00000269137 N4BP2Q86UW6 1770 aaPredicted RBP17.81■□□□□ 0.44
SS18-201ENST00000269137 ERBB4Q15303 1308 aa17.8■□□□□ 0.44
SS18-201ENST00000269137 AFF2P51816 1311 aa17.79■□□□□ 0.44
SS18-201ENST00000269137 ANXA1P04083 346 aa17.79■□□□□ 0.44
SS18-201ENST00000269137 SLC4A10Q6U841 1118 aa17.79■□□□□ 0.44
SS18-201ENST00000269137 VSIG10Q8N0Z9 540 aa17.79■□□□□ 0.44
SS18-201ENST00000269137 ATG3Q9NT62 314 aa17.79■□□□□ 0.44
SS18-201ENST00000269137 ASAP1Q9ULH1 1129 aa17.78■□□□□ 0.44
SS18-201ENST00000269137 DOT1LQ8TEK3 1739 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 PI4KAP2A4QPH2 592 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 PTCD1O75127 700 aaKnown RBP17.77■□□□□ 0.44
SS18-201ENST00000269137 PRIM1P49642 420 aaKnown RBP17.77■□□□□ 0.44
SS18-201ENST00000269137 LRP10Q7Z4F1 713 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 PI4KAP1Q8N8J0 262 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 DNAAF4Q8WXU2 420 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 GJD4Q96KN9 370 aaPredicted RBP17.77■□□□□ 0.44
SS18-201ENST00000269137 ATRNO75882 1429 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 ADCY9O60503 1353 aa17.77■□□□□ 0.44
SS18-201ENST00000269137 THSD7AQ9UPZ6 1657 aa17.77■□□□□ 0.43
SS18-201ENST00000269137 KSR2Q6VAB6 950 aa17.77■□□□□ 0.43
SS18-201ENST00000269137 TEX13AQ9BXU3 409 aaPredicted RBP17.77■□□□□ 0.43
SS18-201ENST00000269137 TSHZ2Q9NRE2 1034 aa17.77■□□□□ 0.43
SS18-201ENST00000269137 DDX58O95786 925 aaKnown RBP17.76■□□□□ 0.43
SS18-201ENST00000269137 TRPC5Q9UL62 973 aaPredicted RBP17.76■□□□□ 0.43
SS18-201ENST00000269137 ATP10DQ9P241 1426 aa17.76■□□□□ 0.43
SS18-201ENST00000269137 MEIS3Q99687 375 aa17.75■□□□□ 0.43
SS18-201ENST00000269137 ONECUT3O60422 494 aaPredicted RBP17.75■□□□□ 0.43
SS18-201ENST00000269137 SRCIN1Q9C0H9 1055 aa17.75■□□□□ 0.43
SS18-201ENST00000269137 BEND3Q5T5X7 828 aa17.74■□□□□ 0.43
SS18-201ENST00000269137 SYTL4Q96C24 671 aaPredicted RBP17.74■□□□□ 0.43
SS18-201ENST00000269137 C1orf115Q9H7X2 142 aa17.74■□□□□ 0.43
SS18-201ENST00000269137 GNAI3P08754 354 aa17.73■□□□□ 0.43
SS18-201ENST00000269137 MYL6BP14649 208 aa17.73■□□□□ 0.43
SS18-201ENST00000269137 MAP3K2Q9Y2U5 619 aa17.73■□□□□ 0.43
SS18-201ENST00000269137 NBPF26B4DH59 902 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 NBPF14Q5TI25 921 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 NBPF10Q6P3W6 841 aaKnown RBP17.72■□□□□ 0.43
SS18-201ENST00000269137 COPS6Q7L5N1 327 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 RPAP2Q8IXW5 612 aaPredicted RBP17.72■□□□□ 0.43
SS18-201ENST00000269137 SMC5Q8IY18 1101 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 NBPF15Q8N660 670 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 XAGE3Q8WTP9 111 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 IBTKQ9P2D0 1353 aaPredicted RBP17.72■□□□□ 0.43
SS18-201ENST00000269137 SIRT2Q8IXJ6 389 aa17.72■□□□□ 0.43
SS18-201ENST00000269137 ALDH1L1O75891 902 aa17.71■□□□□ 0.43
SS18-201ENST00000269137 ANKRD44Q8N8A2 993 aa17.71■□□□□ 0.43
SS18-201ENST00000269137 USP44Q9H0E7 712 aa17.71■□□□□ 0.43
SS18-201ENST00000269137 STARD3NLO95772 234 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 GNAI2P04899 355 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 AIMP1Q12904 312 aaKnown RBP17.7■□□□□ 0.42
SS18-201ENST00000269137 ACSBG1Q96GR2 724 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 RBM42Q9BTD8 480 aaKnown RBP17.7■□□□□ 0.42
SS18-201ENST00000269137 A0A0G2JS52 829 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 A1BGP04217 495 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 MYT1Q01538 1121 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 ANKRD13DQ6ZTN6 518 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 DNAJC10Q8IXB1 793 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 LINS1Q8NG48 757 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 SLC4A9Q96Q91 983 aa17.7■□□□□ 0.42
SS18-201ENST00000269137 CEP85Q6P2H3 762 aa17.69■□□□□ 0.42
SS18-201ENST00000269137 RIC3Q7Z5B4 369 aa17.69■□□□□ 0.42
SS18-201ENST00000269137 QTRT2Q9H974 415 aaKnown RBP17.69■□□□□ 0.42
SS18-201ENST00000269137 PIP4K2AP48426 406 aaPredicted RBP17.68■□□□□ 0.42
SS18-201ENST00000269137 SMARCC1Q92922 1105 aaPredicted RBP17.68■□□□□ 0.42
SS18-201ENST00000269137 GCC1Q96CN9 775 aa17.68■□□□□ 0.42
SS18-201ENST00000269137 PLBD2Q8NHP8 589 aa17.68■□□□□ 0.42
SS18-201ENST00000269137 METTL22Q9BUU2 404 aaPredicted RBP17.68■□□□□ 0.42
SS18-201ENST00000269137 PDZRN3Q9UPQ7 1066 aa17.68■□□□□ 0.42
SS18-201ENST00000269137 UBTFL1P0CB47 393 aaPredicted RBP17.67■□□□□ 0.42
SS18-201ENST00000269137 CYP19A1P11511 503 aaPredicted RBP17.67■□□□□ 0.42
SS18-201ENST00000269137 KCNQ2O43526 872 aa17.66■□□□□ 0.42
SS18-201ENST00000269137 NEXNQ0ZGT2 675 aa17.66■□□□□ 0.42
SS18-201ENST00000269137 SKAP1Q86WV1 359 aa17.66■□□□□ 0.42
SS18-201ENST00000269137 SEPT12Q8IYM1 358 aa17.65■□□□□ 0.42
SS18-201ENST00000269137 CICQ96RK0 1608 aaPredicted RBP17.65■□□□□ 0.42
SS18-201ENST00000269137 TJP1Q07157 1748 aa17.65■□□□□ 0.42
SS18-201ENST00000269137 HMMRO75330 724 aa17.65■□□□□ 0.42
SS18-201ENST00000269137 DCTPP1Q9H773 170 aa17.65■□□□□ 0.42
SS18-201ENST00000269137 HDAC5Q9UQL6 1122 aa17.65■□□□□ 0.42
SS18-201ENST00000269137 LOC102724428A0A0B4J2F2 783 aa17.64■□□□□ 0.41
SS18-201ENST00000269137 IGKV5-2P06315 115 aa17.64■□□□□ 0.41
SS18-201ENST00000269137 SIK1P57059 783 aa17.64■□□□□ 0.41
SS18-201ENST00000269137 LRRFIP2Q9Y608 721 aaKnown RBP17.64■□□□□ 0.41
SS18-201ENST00000269137 UTYO14607 1347 aa17.64■□□□□ 0.41
SS18-201ENST00000269137 ARFGEF2Q9Y6D5 1785 aa17.63■□□□□ 0.41
SS18-201ENST00000269137 PALLDQ8WX93 1383 aa17.63■□□□□ 0.41
SS18-201ENST00000269137 NBPF7P0C2Y1 421 aaPredicted RBP17.63■□□□□ 0.41
SS18-201ENST00000269137 ATP8B2P98198 1209 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms