RNA–Protein interactions for RNA: ENST00000264640.8

SMARCE1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-201ENST00000264640 MS4A4AQ96JQ5 239 aa9.52□□□□□ -0.89
SMARCE1-201ENST00000264640 TTC21AQ8NDW8 1320 aa9.52□□□□□ -0.89
SMARCE1-201ENST00000264640 KTN1Q86UP2 1357 aaKnown RBP9.51□□□□□ -0.89
SMARCE1-201ENST00000264640 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.51□□□□□ -0.89
SMARCE1-201ENST00000264640 JMYQ8N9B5 988 aa9.51□□□□□ -0.89
SMARCE1-201ENST00000264640 LTV1Q96GA3 475 aaPredicted RBP9.51□□□□□ -0.89
SMARCE1-201ENST00000264640 STAC3Q96MF2 364 aa9.51□□□□□ -0.89
SMARCE1-201ENST00000264640 MEGF6O75095 1541 aa9.51□□□□□ -0.89
SMARCE1-201ENST00000264640 USP47Q96K76 1375 aa9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 RIMBP2O15034 1052 aa9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 AMIGO3Q86WK7 504 aa9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 ZFP91Q96JP5 570 aaPredicted RBP9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 ZSWIM6Q9HCJ5 1215 aa9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 TNRC6CQ9HCJ0 1690 aaKnown RBP9.5□□□□□ -0.89
SMARCE1-201ENST00000264640 PHF14O94880 888 aa9.49□□□□□ -0.89
SMARCE1-201ENST00000264640 NME9Q86XW9 330 aa9.49□□□□□ -0.89
SMARCE1-201ENST00000264640 WASHC2AQ641Q2 1341 aa9.49□□□□□ -0.89
SMARCE1-201ENST00000264640 EVC2Q86UK5 1308 aa9.49□□□□□ -0.89
SMARCE1-201ENST00000264640 ARFGEF1Q9Y6D6 1849 aa9.49□□□□□ -0.89
SMARCE1-201ENST00000264640 PXDNLA1KZ92 1463 aa9.48□□□□□ -0.89
SMARCE1-201ENST00000264640 KCPQ6ZWJ8 1503 aa9.48□□□□□ -0.89
SMARCE1-201ENST00000264640 ROCK2O75116 1388 aaKnown RBP9.48□□□□□ -0.89
SMARCE1-201ENST00000264640 SBF1O95248 1867 aa9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 SLC34A2O95436 690 aa9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 ERICH6BQ5W0A0 696 aa9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 C16orf71Q8IYS4 520 aaPredicted RBP9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 RBM46Q8TBY0 533 aaKnown RBP9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 USP31Q70CQ4 1352 aa9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 MAP2P11137 1827 aaKnown RBP9.47□□□□□ -0.89
SMARCE1-201ENST00000264640 HSPA1AP0DMV8 641 aaKnown RBP9.46□□□□□ -0.9
SMARCE1-201ENST00000264640 HSPA1BP0DMV9 641 aaKnown RBP9.46□□□□□ -0.9
SMARCE1-201ENST00000264640 GPR153Q6NV75 609 aa9.46□□□□□ -0.9
SMARCE1-201ENST00000264640 BCS1LQ9Y276 419 aa9.46□□□□□ -0.9
SMARCE1-201ENST00000264640 PALLDQ8WX93 1383 aa9.46□□□□□ -0.9
SMARCE1-201ENST00000264640 CD163L1Q9NR16 1453 aa9.46□□□□□ -0.9
SMARCE1-201ENST00000264640 VARS2Q5ST30 1063 aaKnown RBP9.45□□□□□ -0.9
SMARCE1-201ENST00000264640 ARHGAP27Q6ZUM4 889 aa9.45□□□□□ -0.9
SMARCE1-201ENST00000264640 FLAD1Q8NFF5 587 aa9.45□□□□□ -0.9
SMARCE1-201ENST00000264640 AK7Q96M32 723 aa9.45□□□□□ -0.9
SMARCE1-201ENST00000264640 SBNO2Q9Y2G9 1366 aa9.45□□□□□ -0.9
SMARCE1-201ENST00000264640 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.44□□□□□ -0.9
SMARCE1-201ENST00000264640 HNRNPUQ00839 825 aaKnown RBP eCLIP9.44□□□□□ -0.9
SMARCE1-201ENST00000264640 ZCRB1Q8TBF4 217 aaKnown RBP9.44□□□□□ -0.9
SMARCE1-201ENST00000264640 CCDC88AQ3V6T2 1871 aa9.44□□□□□ -0.9
SMARCE1-201ENST00000264640 C4AP0C0L4 1744 aa9.43□□□□□ -0.9
SMARCE1-201ENST00000264640 A0A0G2JLW4 131 aa9.43□□□□□ -0.9
SMARCE1-201ENST00000264640 FSTL1Q12841 308 aa9.43□□□□□ -0.9
SMARCE1-201ENST00000264640 USHBP1Q8N6Y0 703 aa9.43□□□□□ -0.9
SMARCE1-201ENST00000264640 PRKRIP1Q9H875 184 aaPredicted RBP9.43□□□□□ -0.9
SMARCE1-201ENST00000264640 TIAM2Q8IVF5 1701 aa9.42□□□□□ -0.9
SMARCE1-201ENST00000264640 MMP10P09238 476 aa9.42□□□□□ -0.9
SMARCE1-201ENST00000264640 C9orf131Q5VYM1 1079 aa9.42□□□□□ -0.9
SMARCE1-201ENST00000264640 MPRIPQ6WCQ1 1025 aa9.42□□□□□ -0.9
SMARCE1-201ENST00000264640 ZNF687Q8N1G0 1237 aa9.42□□□□□ -0.9
SMARCE1-201ENST00000264640 IP6K1Q92551 441 aa9.42□□□□□ -0.9
SMARCE1-201ENST00000264640 C10orf71Q711Q0 1435 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 NSD3Q9BZ95 1437 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 PLEKHG2Q9H7P9 1386 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 KIF7Q2M1P5 1343 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 FBLN1P23142 703 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 RRAGCQ9HB90 399 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 MRS2Q9HD23 443 aa9.41□□□□□ -0.9
SMARCE1-201ENST00000264640 EDC4Q6P2E9 1401 aaKnown RBP9.4□□□□□ -0.9
SMARCE1-201ENST00000264640 FCHSD2O94868 740 aa9.4□□□□□ -0.9
SMARCE1-201ENST00000264640 DPEP1P16444 411 aa9.4□□□□□ -0.9
SMARCE1-201ENST00000264640 LINC00116Q8NCU8 138 aa9.4□□□□□ -0.9
SMARCE1-201ENST00000264640 FBXO22Q8NEZ5 403 aa9.4□□□□□ -0.9
SMARCE1-201ENST00000264640 CARD11Q9BXL7 1154 aa9.4□□□□□ -0.9
SMARCE1-201ENST00000264640 MAP3K19Q56UN5 1328 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 KDM2BQ8NHM5 1336 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 GNPATO15228 680 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 SSFA2P28290 1259 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 HOXC9P31274 260 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 TMC1Q8TDI8 760 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 RNF181Q9P0P0 153 aa9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 COL5A3P25940 1745 aaPredicted RBP9.39□□□□□ -0.91
SMARCE1-201ENST00000264640 A0A1W2PP64 1363 aa9.38□□□□□ -0.91
SMARCE1-201ENST00000264640 ZBED9Q6R2W3 1325 aa9.38□□□□□ -0.91
SMARCE1-201ENST00000264640 AMPHP49418 695 aa9.38□□□□□ -0.91
SMARCE1-201ENST00000264640 NBPF6Q5VWK0 638 aa9.38□□□□□ -0.91
SMARCE1-201ENST00000264640 SMC1BQ8NDV3 1235 aa9.38□□□□□ -0.91
SMARCE1-201ENST00000264640 NBPF4Q96M43 638 aa9.38□□□□□ -0.91
SMARCE1-201ENST00000264640 PCDH11XQ9BZA7 1347 aa9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 PCDH11YQ9BZA8 1340 aa9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 TGFB2P61812 414 aa9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 HDGFL2Q7Z4V5 671 aaPredicted RBP9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 RAPGEF4Q8WZA2 1011 aa9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 RNF166Q96A37 237 aaPredicted RBP9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 SLC12A5Q9H2X9 1139 aa9.37□□□□□ -0.91
SMARCE1-201ENST00000264640 MYH14Q7Z406 1995 aaKnown RBP9.36□□□□□ -0.91
SMARCE1-201ENST00000264640 ITPK1Q13572 414 aa9.36□□□□□ -0.91
SMARCE1-201ENST00000264640 ARSIQ5FYB1 569 aa9.36□□□□□ -0.91
SMARCE1-201ENST00000264640 SMARCC1Q92922 1105 aaPredicted RBP9.36□□□□□ -0.91
SMARCE1-201ENST00000264640 KIF20BQ96Q89 1820 aa9.35□□□□□ -0.91
SMARCE1-201ENST00000264640 LOC102724428A0A0B4J2F2 783 aa9.35□□□□□ -0.91
SMARCE1-201ENST00000264640 CYP27B1O15528 508 aa9.35□□□□□ -0.91
SMARCE1-201ENST00000264640 TATP17735 454 aaPredicted RBP9.35□□□□□ -0.91
SMARCE1-201ENST00000264640 SIK1P57059 783 aa9.35□□□□□ -0.91
SMARCE1-201ENST00000264640 RRS1Q15050 365 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms