RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 NPHP4O75161 1426 aaPredicted RBP19.71■□□□□ 0.75
CTCF-201ENST00000264010 MAP3K2Q9Y2U5 619 aa19.7■□□□□ 0.74
CTCF-201ENST00000264010 MON2Q7Z3U7 1717 aa19.7■□□□□ 0.74
CTCF-201ENST00000264010 FOXD4L5Q5VV16 416 aaPredicted RBP19.7■□□□□ 0.74
CTCF-201ENST00000264010 FOXD4L4Q8WXT5 416 aaPredicted RBP19.7■□□□□ 0.74
CTCF-201ENST00000264010 ANTXR1Q9H6X2 564 aa19.69■□□□□ 0.74
CTCF-201ENST00000264010 CADPS2Q86UW7 1296 aa19.69■□□□□ 0.74
CTCF-201ENST00000264010 MAP4K4O95819 1239 aaPredicted RBP19.69■□□□□ 0.74
CTCF-201ENST00000264010 MYL6BP14649 208 aa19.69■□□□□ 0.74
CTCF-201ENST00000264010 MCTP1Q6DN14 999 aa19.69■□□□□ 0.74
CTCF-201ENST00000264010 RHPN1Q8TCX5 695 aa19.69■□□□□ 0.74
CTCF-201ENST00000264010 CABP4P57796 275 aa19.68■□□□□ 0.74
CTCF-201ENST00000264010 PNMA6EA0A0J9YXQ4 647 aa19.68■□□□□ 0.74
CTCF-201ENST00000264010 LARP1Q6PKG0 1096 aaKnown RBP19.68■□□□□ 0.74
CTCF-201ENST00000264010 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.68■□□□□ 0.74
CTCF-201ENST00000264010 ALDH1L1O75891 902 aa19.68■□□□□ 0.74
CTCF-201ENST00000264010 BCL11BQ9C0K0 894 aaPredicted RBP19.68■□□□□ 0.74
CTCF-201ENST00000264010 ARHGEF25Q86VW2 580 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 SSH2Q76I76 1423 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 C3P01024 1663 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 GLRX3O76003 335 aaKnown RBP19.67■□□□□ 0.74
CTCF-201ENST00000264010 MRE11P49959 708 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 EVA1CP58658 441 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 ADGRL3Q9HAR2 1447 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 USP44Q9H0E7 712 aa19.67■□□□□ 0.74
CTCF-201ENST00000264010 A0A0G2JS52 829 aa19.66■□□□□ 0.74
CTCF-201ENST00000264010 KSR2Q6VAB6 950 aa19.66■□□□□ 0.74
CTCF-201ENST00000264010 IFNL2Q8IZJ0 200 aa19.66■□□□□ 0.74
CTCF-201ENST00000264010 ESYT1Q9BSJ8 1104 aa19.66■□□□□ 0.74
CTCF-201ENST00000264010 ZKSCAN1P17029 563 aaPredicted RBP19.66■□□□□ 0.74
CTCF-201ENST00000264010 ZNF330Q9Y3S2 320 aaPredicted RBP19.66■□□□□ 0.74
CTCF-201ENST00000264010 NPHP3Q7Z494 1330 aa19.65■□□□□ 0.74
CTCF-201ENST00000264010 BBXQ8WY36 941 aaPredicted RBP19.65■□□□□ 0.74
CTCF-201ENST00000264010 SETD1AO15047 1707 aaKnown RBP19.65■□□□□ 0.74
CTCF-201ENST00000264010 ZNF771Q7L3S4 317 aaPredicted RBP19.65■□□□□ 0.74
CTCF-201ENST00000264010 FER1L4A9Z1Z3 1794 aa19.64■□□□□ 0.74
CTCF-201ENST00000264010 PRDM11Q9NQV5 511 aa19.64■□□□□ 0.74
CTCF-201ENST00000264010 SSFA2P28290 1259 aa19.64■□□□□ 0.73
CTCF-201ENST00000264010 FGD1P98174 961 aa19.64■□□□□ 0.73
CTCF-201ENST00000264010 AACSQ86V21 672 aa19.64■□□□□ 0.73
CTCF-201ENST00000264010 ISY1Q9ULR0 285 aaKnown RBP19.64■□□□□ 0.73
CTCF-201ENST00000264010 KCNQ3O43525 872 aa19.63■□□□□ 0.73
CTCF-201ENST00000264010 AKAP12Q02952 1782 aa19.63■□□□□ 0.73
CTCF-201ENST00000264010 CEP170BQ9Y4F5 1589 aaPredicted RBP19.63■□□□□ 0.73
CTCF-201ENST00000264010 HIP1O00291 1037 aa19.63■□□□□ 0.73
CTCF-201ENST00000264010 TOM1L2Q6ZVM7 507 aa19.63■□□□□ 0.73
CTCF-201ENST00000264010 SYAP1Q96A49 352 aaPredicted RBP19.63■□□□□ 0.73
CTCF-201ENST00000264010 RAB3GAP1Q15042 981 aa19.62■□□□□ 0.73
CTCF-201ENST00000264010 OSBPL3Q9H4L5 887 aa19.62■□□□□ 0.73
CTCF-201ENST00000264010 CHRNA2Q15822 529 aa19.61■□□□□ 0.73
CTCF-201ENST00000264010 LINS1Q8NG48 757 aa19.61■□□□□ 0.73
CTCF-201ENST00000264010 CWC27Q6UX04 472 aaKnown RBP19.61■□□□□ 0.73
CTCF-201ENST00000264010 SSH3Q8TE77 659 aa19.61■□□□□ 0.73
CTCF-201ENST00000264010 SIL1Q9H173 461 aa19.61■□□□□ 0.73
CTCF-201ENST00000264010 CHMLP26374 656 aa19.61■□□□□ 0.73
CTCF-201ENST00000264010 FMNL2Q96PY5 1086 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 AOX1Q06278 1338 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 SLC39A6Q13433 755 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 DDX21Q9NR30 783 aaKnown RBP eCLIP19.6■□□□□ 0.73
CTCF-201ENST00000264010 ANAPC15P60006 121 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 RNF20Q5VTR2 975 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 FSD1Q9BTV5 496 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 ECHDC1Q9NTX5 307 aa19.6■□□□□ 0.73
CTCF-201ENST00000264010 MYD88Q99836 296 aa19.59■□□□□ 0.73
CTCF-201ENST00000264010 IBTKQ9P2D0 1353 aaPredicted RBP19.59■□□□□ 0.73
CTCF-201ENST00000264010 NBPF7P0C2Y1 421 aaPredicted RBP19.59■□□□□ 0.73
CTCF-201ENST00000264010 PLCD3Q8N3E9 789 aa19.59■□□□□ 0.73
CTCF-201ENST00000264010 ATP10DQ9P241 1426 aa19.59■□□□□ 0.73
CTCF-201ENST00000264010 GRM8O00222 908 aa19.59■□□□□ 0.73
CTCF-201ENST00000264010 SNRPA1P09661 255 aaKnown RBP19.58■□□□□ 0.73
CTCF-201ENST00000264010 UPF3BQ9BZI7 483 aaKnown RBP19.58■□□□□ 0.73
CTCF-201ENST00000264010 GIGYF1O75420 1035 aaPredicted RBP19.58■□□□□ 0.73
CTCF-201ENST00000264010 BEND3Q5T5X7 828 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 CABLES1Q8TDN4 633 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 CHAF1AQ13111 956 aaPredicted RBP19.57■□□□□ 0.72
CTCF-201ENST00000264010 NFATC2IPQ8NCF5 419 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 SMC3Q9UQE7 1217 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 ATP6V1DQ9Y5K8 247 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 TAF7LQ5H9L4 462 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 GORABQ5T7V8 394 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 NRKQ7Z2Y5 1582 aa19.57■□□□□ 0.72
CTCF-201ENST00000264010 PRPF40AO75400 957 aaKnown RBP19.57■□□□□ 0.72
CTCF-201ENST00000264010 BAG4O95429 457 aaKnown RBP19.57■□□□□ 0.72
CTCF-201ENST00000264010 CWF19L2Q2TBE0 894 aaKnown RBP19.57■□□□□ 0.72
CTCF-201ENST00000264010 FOXD4L6Q3SYB3 417 aaPredicted RBP19.56■□□□□ 0.72
CTCF-201ENST00000264010 FOXD4L3Q6VB84 417 aaPredicted RBP19.56■□□□□ 0.72
CTCF-201ENST00000264010 XAGE3Q8WTP9 111 aa19.56■□□□□ 0.72
CTCF-201ENST00000264010 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.56■□□□□ 0.72
CTCF-201ENST00000264010 ZNF790Q6PG37 636 aa19.56■□□□□ 0.72
CTCF-201ENST00000264010 STAP2Q9UGK3 403 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 CCDC9Q9Y3X0 531 aaKnown RBP19.55■□□□□ 0.72
CTCF-201ENST00000264010 CSPP1Q1MSJ5 1256 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 TTC41PQ6P2S7 1318 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 COPS6Q7L5N1 327 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 GRPEL1Q9HAV7 217 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 STRN4Q9NRL3 753 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 DCAF5Q96JK2 942 aa19.55■□□□□ 0.72
CTCF-201ENST00000264010 ANKRD13DQ6ZTN6 518 aa19.54■□□□□ 0.72
CTCF-201ENST00000264010 DDX54Q8TDD1 881 aaKnown RBP19.54■□□□□ 0.72
CTCF-201ENST00000264010 ESPNB1AK53 854 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms