RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CNNM1Q9NRU3 951 aa14.14□□□□□ -0.15
VPS4A-201ENST00000254950 CWC25Q9NXE8 425 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-201ENST00000254950 LRRC7Q96NW7 1537 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 PIP4K2AP48426 406 aaPredicted RBP14.13□□□□□ -0.15
VPS4A-201ENST00000254950 UBE3BQ7Z3V4 1068 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 G3V3G9 751 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 DCAF8Q5TAQ9 597 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 SKAP1Q86WV1 359 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 C22orf23Q9BZE7 217 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 CEP126Q9P2H0 1117 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 USP19O94966 1318 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 KCNQ3O43525 872 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 USP21Q9UK80 565 aa14.13□□□□□ -0.15
VPS4A-201ENST00000254950 ATP6V1AP38606 617 aa14.12□□□□□ -0.15
VPS4A-201ENST00000254950 PPP1R42Q7Z4L9 355 aa14.12□□□□□ -0.15
VPS4A-201ENST00000254950 VPS37DQ86XT2 251 aa14.12□□□□□ -0.15
VPS4A-201ENST00000254950 GRM8O00222 908 aa14.12□□□□□ -0.15
VPS4A-201ENST00000254950 GIGYF1O75420 1035 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-201ENST00000254950 SF3B2Q13435 895 aaKnown RBP14.12□□□□□ -0.15
VPS4A-201ENST00000254950 FAM98CQ17RN3 349 aaKnown RBP14.12□□□□□ -0.15
VPS4A-201ENST00000254950 AACSQ86V21 672 aa14.12□□□□□ -0.15
VPS4A-201ENST00000254950 MST1RQ04912 1400 aa14.12□□□□□ -0.15
VPS4A-201ENST00000254950 ZBTB7BO15156 539 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-201ENST00000254950 NCLP19338 710 aaKnown RBP14.12□□□□□ -0.15
VPS4A-201ENST00000254950 SLKQ9H2G2 1235 aaPredicted RBP14.12□□□□□ -0.15
VPS4A-201ENST00000254950 GPTP24298 496 aa14.11□□□□□ -0.15
VPS4A-201ENST00000254950 TRMT112Q9UI30 125 aaKnown RBP14.11□□□□□ -0.15
VPS4A-201ENST00000254950 ZPR1O75312 459 aa14.11□□□□□ -0.15
VPS4A-201ENST00000254950 MPHOSPH8Q99549 860 aa14.11□□□□□ -0.15
VPS4A-201ENST00000254950 SMARCA5O60264 1052 aaPredicted RBP14.11□□□□□ -0.15
VPS4A-201ENST00000254950 PRIM1P49642 420 aaKnown RBP14.11□□□□□ -0.15
VPS4A-201ENST00000254950 FSD1Q9BTV5 496 aa14.11□□□□□ -0.15
VPS4A-201ENST00000254950 SOS2Q07890 1332 aaPredicted RBP14.1□□□□□ -0.15
VPS4A-201ENST00000254950 BICDL1Q6ZP65 573 aa14.1□□□□□ -0.15
VPS4A-201ENST00000254950 CCDC85AQ96PX6 553 aaPredicted RBP14.1□□□□□ -0.15
VPS4A-201ENST00000254950 MYOM1P52179 1685 aa14.1□□□□□ -0.15
VPS4A-201ENST00000254950 ZKSCAN1P17029 563 aaPredicted RBP14.09□□□□□ -0.15
VPS4A-201ENST00000254950 ATP8B2P98198 1209 aa14.09□□□□□ -0.15
VPS4A-201ENST00000254950 MX1P20591 662 aa14.09□□□□□ -0.15
VPS4A-201ENST00000254950 BRPF1P55201 1214 aaPredicted RBP14.09□□□□□ -0.15
VPS4A-201ENST00000254950 KDRP35968 1356 aa14.09□□□□□ -0.15
VPS4A-201ENST00000254950 ANP32EQ9BTT0 268 aa14.09□□□□□ -0.15
VPS4A-201ENST00000254950 HIP1O00291 1037 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 CCDC158Q5M9N0 1113 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 CWF19L2Q2TBE0 894 aaKnown RBP14.08□□□□□ -0.16
VPS4A-201ENST00000254950 CEP85Q6P2H3 762 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 ADAMTSL3P82987 1691 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 NCAPD2Q15021 1401 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 NUCB1Q02818 461 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 IFIT5Q13325 482 aaKnown RBP14.08□□□□□ -0.16
VPS4A-201ENST00000254950 NUTM1Q86Y26 1132 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 SMC5Q8IY18 1101 aa14.08□□□□□ -0.16
VPS4A-201ENST00000254950 DNAJC2Q99543 621 aaKnown RBP14.08□□□□□ -0.16
VPS4A-201ENST00000254950 ABCC4O15439 1325 aa14.07□□□□□ -0.16
VPS4A-201ENST00000254950 RNF20Q5VTR2 975 aa14.07□□□□□ -0.16
VPS4A-201ENST00000254950 GLRX3O76003 335 aaKnown RBP14.07□□□□□ -0.16
VPS4A-201ENST00000254950 DNAJC10Q8IXB1 793 aa14.07□□□□□ -0.16
VPS4A-201ENST00000254950 AK7Q96M32 723 aa14.07□□□□□ -0.16
VPS4A-201ENST00000254950 A1BGP04217 495 aa14.06□□□□□ -0.16
VPS4A-201ENST00000254950 JARID2Q92833 1246 aaPredicted RBP14.06□□□□□ -0.16
VPS4A-201ENST00000254950 CYP27B1O15528 508 aa14.06□□□□□ -0.16
VPS4A-201ENST00000254950 NOL8Q76FK4 1167 aaKnown RBP14.06□□□□□ -0.16
VPS4A-201ENST00000254950 PLBD2Q8NHP8 589 aa14.06□□□□□ -0.16
VPS4A-201ENST00000254950 DCTPP1Q9H773 170 aa14.06□□□□□ -0.16
VPS4A-201ENST00000254950 USP16Q9Y5T5 823 aa14.06□□□□□ -0.16
VPS4A-201ENST00000254950 IGHMBP2P38935 993 aaKnown RBP14.05□□□□□ -0.16
VPS4A-201ENST00000254950 DZIP3Q86Y13 1208 aaKnown RBP14.05□□□□□ -0.16
VPS4A-201ENST00000254950 ADGRB2O60241 1585 aa14.05□□□□□ -0.16
VPS4A-201ENST00000254950 TTC39AQ5SRH9 613 aa14.05□□□□□ -0.16
VPS4A-201ENST00000254950 METTL22Q9BUU2 404 aaPredicted RBP14.05□□□□□ -0.16
VPS4A-201ENST00000254950 KNDC1Q76NI1 1749 aa14.05□□□□□ -0.16
VPS4A-201ENST00000254950 ERBB4Q15303 1308 aa14.05□□□□□ -0.16
VPS4A-201ENST00000254950 WASHC4Q2M389 1173 aa14.05□□□□□ -0.16
VPS4A-201ENST00000254950 METTL24Q5JXM2 366 aa14.05□□□□□ -0.16
VPS4A-201ENST00000254950 KIF20BQ96Q89 1820 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 NRXN3Q9Y4C0 1643 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 ANP32BQ92688 251 aaKnown RBP14.04□□□□□ -0.16
VPS4A-201ENST00000254950 TBC1D2BQ9UPU7 963 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 AKAP2Q9Y2D5 859 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
VPS4A-201ENST00000254950 SLC4A3P48751 1232 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 RHPN1Q8TCX5 695 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 ANKRD18BA2A2Z9 1011 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 BMP2KLQ5H9B9 411 aa14.04□□□□□ -0.16
VPS4A-201ENST00000254950 THRAP3Q9Y2W1 955 aaKnown RBP14.03□□□□□ -0.16
VPS4A-201ENST00000254950 LMBR1LQ6UX01 489 aa14.03□□□□□ -0.16
VPS4A-201ENST00000254950 UNC5CLQ8IV45 518 aa14.03□□□□□ -0.16
VPS4A-201ENST00000254950 TOMM22Q9NS69 142 aa14.03□□□□□ -0.16
VPS4A-201ENST00000254950 APPP05067 770 aa14.03□□□□□ -0.16
VPS4A-201ENST00000254950 SSH2Q76I76 1423 aa14.02□□□□□ -0.16
VPS4A-201ENST00000254950 MAP4K4O95819 1239 aaPredicted RBP14.02□□□□□ -0.16
VPS4A-201ENST00000254950 CERKQ8TCT0 537 aa14.02□□□□□ -0.16
VPS4A-201ENST00000254950 TAOK2Q9UL54 1235 aa14.02□□□□□ -0.16
VPS4A-201ENST00000254950 COL3A1P02461 1466 aaPredicted RBP14.02□□□□□ -0.16
VPS4A-201ENST00000254950 RFC4P35249 363 aa14.02□□□□□ -0.17
VPS4A-201ENST00000254950 GNL3LQ9NVN8 582 aaKnown RBP14.02□□□□□ -0.17
VPS4A-201ENST00000254950 CCDC8Q9H0W5 538 aaPredicted RBP14.02□□□□□ -0.17
VPS4A-201ENST00000254950 FOXD4L1Q9NU39 408 aa14.02□□□□□ -0.17
VPS4A-201ENST00000254950 TRPC5Q9UL62 973 aaPredicted RBP14.02□□□□□ -0.17
VPS4A-201ENST00000254950 NOL10Q9BSC4 688 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms