RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 C5P01031 1676 aa28.59■■■□□ 2.17
CDX1-201ENST00000231656 PRAMEF22A3QJZ6 481 aa28.59■■■□□ 2.17
CDX1-201ENST00000231656 SLC4A2P04920 1241 aa28.59■■■□□ 2.17
CDX1-201ENST00000231656 RGS3P49796 1198 aa28.59■■■□□ 2.17
CDX1-201ENST00000231656 API5Q9BZZ5 524 aaKnown RBP28.59■■■□□ 2.17
CDX1-201ENST00000231656 EIF2S2P20042 333 aaKnown RBP28.58■■■□□ 2.17
CDX1-201ENST00000231656 HDAC1Q13547 482 aaPredicted RBP28.58■■■□□ 2.17
CDX1-201ENST00000231656 SYTL4Q96C24 671 aaPredicted RBP28.58■■■□□ 2.17
CDX1-201ENST00000231656 STK31Q9BXU1 1019 aa28.58■■■□□ 2.17
CDX1-201ENST00000231656 KCPQ6ZWJ8 1503 aa28.57■■■□□ 2.16
CDX1-201ENST00000231656 CHMP4AQ9BY43 222 aa28.57■■■□□ 2.16
CDX1-201ENST00000231656 SEPT12Q8IYM1 358 aa28.57■■■□□ 2.16
CDX1-201ENST00000231656 ACSBG1Q96GR2 724 aa28.56■■■□□ 2.16
CDX1-201ENST00000231656 ASAP1Q9ULH1 1129 aa28.56■■■□□ 2.16
CDX1-201ENST00000231656 SNRPA1P09661 255 aaKnown RBP28.55■■■□□ 2.16
CDX1-201ENST00000231656 RGS12O14924 1447 aa28.54■■■□□ 2.16
CDX1-201ENST00000231656 ZBTB7BO15156 539 aaPredicted RBP28.54■■■□□ 2.16
CDX1-201ENST00000231656 ATG3Q9NT62 314 aa28.54■■■□□ 2.16
CDX1-201ENST00000231656 MSH5O43196 834 aa28.53■■■□□ 2.16
CDX1-201ENST00000231656 PTCD1O75127 700 aaKnown RBP28.52■■■□□ 2.16
CDX1-201ENST00000231656 CHMP4BQ9H444 224 aaKnown RBP28.52■■■□□ 2.16
CDX1-201ENST00000231656 PDZRN3Q9UPQ7 1066 aa28.52■■■□□ 2.16
CDX1-201ENST00000231656 RBM6P78332 1123 aaKnown RBP28.51■■■□□ 2.15
CDX1-201ENST00000231656 FAM161AQ3B820 660 aa28.51■■■□□ 2.15
CDX1-201ENST00000231656 G2E3Q7L622 706 aa28.51■■■□□ 2.15
CDX1-201ENST00000231656 CHPF2Q9P2E5 772 aa28.51■■■□□ 2.15
CDX1-201ENST00000231656 LAMB4A4D0S4 1761 aa28.5■■■□□ 2.15
CDX1-201ENST00000231656 PTPRCP08575 1304 aa28.5■■■□□ 2.15
CDX1-201ENST00000231656 C8orf34Q49A92 452 aa28.5■■■□□ 2.15
CDX1-201ENST00000231656 USP16Q9Y5T5 823 aa28.5■■■□□ 2.15
CDX1-201ENST00000231656 BRWD3Q6RI45 1802 aa28.49■■■□□ 2.15
CDX1-201ENST00000231656 FAM182BQ5T319 152 aa28.49■■■□□ 2.15
CDX1-201ENST00000231656 DBF4Q9UBU7 674 aaPredicted RBP28.49■■■□□ 2.15
CDX1-201ENST00000231656 KCNQ2O43526 872 aa28.48■■■□□ 2.15
CDX1-201ENST00000231656 FLIIQ13045 1269 aa28.47■■■□□ 2.15
CDX1-201ENST00000231656 ANP32AP39687 249 aaKnown RBP28.46■■■□□ 2.15
CDX1-201ENST00000231656 INTS3Q68E01 1043 aaKnown RBP28.46■■■□□ 2.15
CDX1-201ENST00000231656 SMC5Q8IY18 1101 aa28.46■■■□□ 2.15
CDX1-201ENST00000231656 PHAXQ9H814 394 aaKnown RBP28.45■■■□□ 2.15
CDX1-201ENST00000231656 ANXA1P04083 346 aa28.45■■■□□ 2.14
CDX1-201ENST00000231656 VSIG10Q8N0Z9 540 aa28.45■■■□□ 2.14
CDX1-201ENST00000231656 RGS17Q9UGC6 210 aaPredicted RBP28.45■■■□□ 2.14
CDX1-201ENST00000231656 SBF2Q86WG5 1849 aa28.44■■■□□ 2.14
CDX1-201ENST00000231656 PDIA6Q15084 440 aa28.44■■■□□ 2.14
CDX1-201ENST00000231656 PROSER3Q2NL68 480 aa28.44■■■□□ 2.14
CDX1-201ENST00000231656 RBM42Q9BTD8 480 aaKnown RBP28.44■■■□□ 2.14
CDX1-201ENST00000231656 DDX21Q9NR30 783 aaKnown RBP eCLIP28.44■■■□□ 2.14
CDX1-201ENST00000231656 EP400Q96L91 3159 aa28.43■■■□□ 2.14
CDX1-201ENST00000231656 NHSQ6T4R5 1651 aa28.43■■■□□ 2.14
CDX1-201ENST00000231656 FKBP5Q13451 457 aaPredicted RBP28.42■■■□□ 2.14
CDX1-201ENST00000231656 HYPKQ9NX55 129 aa28.41■■■□□ 2.14
CDX1-201ENST00000231656 RXRBP28702 533 aa28.4■■■□□ 2.14
CDX1-201ENST00000231656 KRT27Q7Z3Y8 459 aa28.4■■■□□ 2.14
CDX1-201ENST00000231656 SLC4A9Q96Q91 983 aa28.4■■■□□ 2.14
CDX1-201ENST00000231656 PTF1AQ7RTS3 328 aa28.39■■■□□ 2.13
CDX1-201ENST00000231656 TEX13AQ9BXU3 409 aaPredicted RBP28.39■■■□□ 2.13
CDX1-201ENST00000231656 C1orf115Q9H7X2 142 aa28.39■■■□□ 2.13
CDX1-201ENST00000231656 BTAF1O14981 1849 aa28.38■■■□□ 2.13
CDX1-201ENST00000231656 F6X3S4 739 aa28.37■■■□□ 2.13
CDX1-201ENST00000231656 DNAJC10Q8IXB1 793 aa28.37■■■□□ 2.13
CDX1-201ENST00000231656 PALLDQ8WX93 1383 aa28.37■■■□□ 2.13
CDX1-201ENST00000231656 ERBB4Q15303 1308 aa28.37■■■□□ 2.13
CDX1-201ENST00000231656 MYL6BP14649 208 aa28.37■■■□□ 2.13
CDX1-201ENST00000231656 SMARCC1Q92922 1105 aaPredicted RBP28.37■■■□□ 2.13
CDX1-201ENST00000231656 TJP1Q07157 1748 aa28.36■■■□□ 2.13
CDX1-201ENST00000231656 PIP4K2AP48426 406 aaPredicted RBP28.36■■■□□ 2.13
CDX1-201ENST00000231656 POTEAQ6S8J7 498 aa28.36■■■□□ 2.13
CDX1-201ENST00000231656 NPM2Q86SE8 214 aaKnown RBP28.36■■■□□ 2.13
CDX1-201ENST00000231656 IPO9Q96P70 1041 aaKnown RBP28.36■■■□□ 2.13
CDX1-201ENST00000231656 N4BP2Q86UW6 1770 aaPredicted RBP28.35■■■□□ 2.13
CDX1-201ENST00000231656 LRP10Q7Z4F1 713 aa28.35■■■□□ 2.13
CDX1-201ENST00000231656 SIRT2Q8IXJ6 389 aa28.35■■■□□ 2.13
CDX1-201ENST00000231656 A1BGP04217 495 aa28.34■■■□□ 2.13
CDX1-201ENST00000231656 NBPF26B4DH59 902 aa28.34■■■□□ 2.13
CDX1-201ENST00000231656 NBPF14Q5TI25 921 aa28.34■■■□□ 2.13
CDX1-201ENST00000231656 NBPF10Q6P3W6 841 aaKnown RBP28.34■■■□□ 2.13
CDX1-201ENST00000231656 NBPF15Q8N660 670 aa28.34■■■□□ 2.13
CDX1-201ENST00000231656 LOC102724428A0A0B4J2F2 783 aa28.33■■■□□ 2.13
CDX1-201ENST00000231656 STARD3NLO95772 234 aa28.33■■■□□ 2.13
CDX1-201ENST00000231656 SIK1P57059 783 aa28.33■■■□□ 2.13
CDX1-201ENST00000231656 NUCB1Q02818 461 aa28.33■■■□□ 2.13
CDX1-201ENST00000231656 SLC4A10Q6U841 1118 aa28.33■■■□□ 2.13
CDX1-201ENST00000231656 FAM196AQ6ZSG2 479 aa28.33■■■□□ 2.13
CDX1-201ENST00000231656 ATP10DQ9P241 1426 aa28.31■■■□□ 2.12
CDX1-201ENST00000231656 CICQ96RK0 1608 aaPredicted RBP28.31■■■□□ 2.12
CDX1-201ENST00000231656 PI4KAP2A4QPH2 592 aa28.31■■■□□ 2.12
CDX1-201ENST00000231656 AIMP1Q12904 312 aaKnown RBP28.31■■■□□ 2.12
CDX1-201ENST00000231656 PI4KAP1Q8N8J0 262 aa28.31■■■□□ 2.12
CDX1-201ENST00000231656 CYP19A1P11511 503 aaPredicted RBP28.3■■■□□ 2.12
CDX1-201ENST00000231656 ATP6V1AP38606 617 aa28.3■■■□□ 2.12
CDX1-201ENST00000231656 XAGE3Q8WTP9 111 aa28.3■■■□□ 2.12
CDX1-201ENST00000231656 GCC1Q96CN9 775 aa28.3■■■□□ 2.12
CDX1-201ENST00000231656 ADCY9O60503 1353 aa28.3■■■□□ 2.12
CDX1-201ENST00000231656 PXDNLA1KZ92 1463 aa28.3■■■□□ 2.12
CDX1-201ENST00000231656 ZNF831Q5JPB2 1677 aa28.3■■■□□ 2.12
CDX1-201ENST00000231656 COPS6Q7L5N1 327 aa28.29■■■□□ 2.12
CDX1-201ENST00000231656 CCT4P50991 539 aaKnown RBP28.29■■■□□ 2.12
CDX1-201ENST00000231656 BCL11BQ9C0K0 894 aaPredicted RBP28.29■■■□□ 2.12
CDX1-201ENST00000231656 DDX58O95786 925 aaKnown RBP28.28■■■□□ 2.12
CDX1-201ENST00000231656 KSR2Q6VAB6 950 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms