RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 FERMT3Q86UX7 667 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 CCDC83Q8IWF9 413 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 SMARCE1Q969G3 411 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 GOLIM4O00461 696 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 ST5P78524 1137 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 CCDC173Q0VFZ6 552 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 RUFY1Q96T51 708 aa21.7■■□□□ 1.06
CLIP2-201ENST00000223398 WASF1Q92558 559 aa21.69■■□□□ 1.06
CLIP2-201ENST00000223398 MPNDQ8N594 471 aa21.69■■□□□ 1.06
CLIP2-201ENST00000223398 SYCP2Q9BX26 1530 aa21.69■■□□□ 1.06
CLIP2-201ENST00000223398 RAPGEF6Q8TEU7 1601 aa21.69■■□□□ 1.06
CLIP2-201ENST00000223398 TRIM27P14373 513 aa21.69■■□□□ 1.06
CLIP2-201ENST00000223398 WDHD1O75717 1129 aaPredicted RBP21.68■■□□□ 1.06
CLIP2-201ENST00000223398 DHX8Q14562 1220 aaKnown RBP21.68■■□□□ 1.06
CLIP2-201ENST00000223398 ANKRD13DQ6ZTN6 518 aa21.68■■□□□ 1.06
CLIP2-201ENST00000223398 WDR7Q9Y4E6 1490 aa21.68■■□□□ 1.06
CLIP2-201ENST00000223398 ZNF213O14771 459 aa21.68■■□□□ 1.06
CLIP2-201ENST00000223398 CHPF2Q9P2E5 772 aa21.68■■□□□ 1.06
CLIP2-201ENST00000223398 BACH2Q9BYV9 841 aa21.67■■□□□ 1.06
CLIP2-201ENST00000223398 CTCFLQ8NI51 663 aaPredicted RBP21.67■■□□□ 1.06
CLIP2-201ENST00000223398 SCLT1Q96NL6 688 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 NKTRP30414 1462 aaKnown RBP21.66■■□□□ 1.06
CLIP2-201ENST00000223398 SLF2Q8IX21 1173 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 IQSEC3Q9UPP2 1182 aaPredicted RBP21.66■■□□□ 1.06
CLIP2-201ENST00000223398 TRAPPC8Q9Y2L5 1435 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 NSD2O96028 1365 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 GUCY1B3Q02153 619 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 TSHZ3Q63HK5 1081 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 SKIDA1Q1XH10 827 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 FEZ1Q99689 392 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 SEPT11Q9NVA2 429 aaKnown RBP21.66■■□□□ 1.06
CLIP2-201ENST00000223398 TTC21AQ8NDW8 1320 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 XAGE3Q8WTP9 111 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 SETDB2Q96T68 719 aa21.66■■□□□ 1.06
CLIP2-201ENST00000223398 IQCA1Q86XH1 822 aa21.65■■□□□ 1.06
CLIP2-201ENST00000223398 LARP6Q9BRS8 491 aaKnown RBP21.65■■□□□ 1.06
CLIP2-201ENST00000223398 ZNF518AQ6AHZ1 1483 aa21.65■■□□□ 1.06
CLIP2-201ENST00000223398 PTPRCP08575 1304 aa21.65■■□□□ 1.06
CLIP2-201ENST00000223398 ZNHIT6Q9NWK9 470 aaKnown RBP21.65■■□□□ 1.06
CLIP2-201ENST00000223398 C19orf44Q9H6X5 657 aa21.65■■□□□ 1.06
CLIP2-201ENST00000223398 ANKRD36BQ8N2N9 1353 aa21.65■■□□□ 1.06
CLIP2-201ENST00000223398 RPRD2Q5VT52 1461 aaKnown RBP21.65■■□□□ 1.06
CLIP2-201ENST00000223398 TRMT1LQ7Z2T5 733 aaKnown RBP21.64■■□□□ 1.06
CLIP2-201ENST00000223398 DEF6Q9H4E7 631 aa21.64■■□□□ 1.06
CLIP2-201ENST00000223398 F8W031 263 aaPredicted RBP21.64■■□□□ 1.06
CLIP2-201ENST00000223398 CEP57L1Q8IYX8 460 aa21.64■■□□□ 1.06
CLIP2-201ENST00000223398 LMTK3Q96Q04 1460 aa21.64■■□□□ 1.05
CLIP2-201ENST00000223398 COPS6Q7L5N1 327 aa21.64■■□□□ 1.05
CLIP2-201ENST00000223398 CCDC39Q9UFE4 941 aa21.64■■□□□ 1.05
CLIP2-201ENST00000223398 CCDC192P0DO97 292 aa21.64■■□□□ 1.05
CLIP2-201ENST00000223398 CFAP45Q9UL16 551 aa21.64■■□□□ 1.05
CLIP2-201ENST00000223398 IFIT3O14879 490 aaKnown RBP21.64■■□□□ 1.05
CLIP2-201ENST00000223398 DACH1Q9UI36 760 aa21.64■■□□□ 1.05
CLIP2-201ENST00000223398 KCNA6P17658 529 aa21.63■■□□□ 1.05
CLIP2-201ENST00000223398 SLC12A7Q9Y666 1083 aa21.63■■□□□ 1.05
CLIP2-201ENST00000223398 MRE11P49959 708 aa21.63■■□□□ 1.05
CLIP2-201ENST00000223398 PIK3R4Q99570 1358 aa21.63■■□□□ 1.05
CLIP2-201ENST00000223398 GRM1Q13255 1194 aa21.63■■□□□ 1.05
CLIP2-201ENST00000223398 HAND2P61296 217 aa21.63■■□□□ 1.05
CLIP2-201ENST00000223398 PPFIBP1Q86W92 1011 aa21.62■■□□□ 1.05
CLIP2-201ENST00000223398 VAT1LQ9HCJ6 419 aa21.62■■□□□ 1.05
CLIP2-201ENST00000223398 CCDC152Q4G0S7 254 aa21.62■■□□□ 1.05
CLIP2-201ENST00000223398 CCDC144CPQ8IYA2 1237 aa21.62■■□□□ 1.05
CLIP2-201ENST00000223398 IL2RBP14784 551 aa21.62■■□□□ 1.05
CLIP2-201ENST00000223398 TNIP1Q15025 636 aa21.62■■□□□ 1.05
CLIP2-201ENST00000223398 NIP7Q9Y221 180 aaKnown RBP eCLIP21.62■■□□□ 1.05
CLIP2-201ENST00000223398 TFCP2L1Q9NZI6 479 aa21.61■■□□□ 1.05
CLIP2-201ENST00000223398 CCT2P78371 535 aaKnown RBP21.61■■□□□ 1.05
CLIP2-201ENST00000223398 FAM43AQ8N2R8 423 aa21.61■■□□□ 1.05
CLIP2-201ENST00000223398 MAP3K1Q13233 1512 aa21.6■■□□□ 1.05
CLIP2-201ENST00000223398 EIF4A2Q14240 407 aaKnown RBP21.6■■□□□ 1.05
CLIP2-201ENST00000223398 NOM1Q5C9Z4 860 aaKnown RBP21.6■■□□□ 1.05
CLIP2-201ENST00000223398 RAB11FIP4Q86YS3 637 aa21.6■■□□□ 1.05
CLIP2-201ENST00000223398 NFATC2IPQ8NCF5 419 aa21.6■■□□□ 1.05
CLIP2-201ENST00000223398 ECHDC1Q9NTX5 307 aa21.6■■□□□ 1.05
CLIP2-201ENST00000223398 PPFIA3O75145 1194 aa21.6■■□□□ 1.05
CLIP2-201ENST00000223398 NUP153P49790 1475 aaKnown RBP21.6■■□□□ 1.05
CLIP2-201ENST00000223398 SIRT1Q96EB6 747 aa21.59■■□□□ 1.05
CLIP2-201ENST00000223398 DUOX2Q9NRD8 1548 aa21.59■■□□□ 1.05
CLIP2-201ENST00000223398 ANKRD18AQ8IVF6 992 aa21.59■■□□□ 1.05
CLIP2-201ENST00000223398 LDHCP07864 332 aa21.59■■□□□ 1.05
CLIP2-201ENST00000223398 RDXP35241 583 aaKnown RBP21.59■■□□□ 1.05
CLIP2-201ENST00000223398 RNF41Q9H4P4 317 aaPredicted RBP21.59■■□□□ 1.05
CLIP2-201ENST00000223398 BIVM-ERCC5R4GMW8 1640 aa21.59■■□□□ 1.05
CLIP2-201ENST00000223398 GOLGA8AA7E2F4 631 aa21.58■■□□□ 1.05
CLIP2-201ENST00000223398 GOLGA8BA8MQT2 603 aa21.58■■□□□ 1.05
CLIP2-201ENST00000223398 CUL5Q93034 780 aa21.58■■□□□ 1.05
CLIP2-201ENST00000223398 BAG3O95817 575 aa21.58■■□□□ 1.05
CLIP2-201ENST00000223398 CCDC196A0A1B0GTZ2 297 aa21.58■■□□□ 1.05
CLIP2-201ENST00000223398 ZMYM3Q14202 1370 aa21.58■■□□□ 1.05
CLIP2-201ENST00000223398 CAMK4Q16566 473 aa21.58■■□□□ 1.04
CLIP2-201ENST00000223398 UBA5Q9GZZ9 404 aa21.58■■□□□ 1.04
CLIP2-201ENST00000223398 TSPY2A6NKD2 308 aa21.57■■□□□ 1.04
CLIP2-201ENST00000223398 AKAP4Q5JQC9 854 aa21.57■■□□□ 1.04
CLIP2-201ENST00000223398 BTG4Q9NY30 223 aa21.57■■□□□ 1.04
CLIP2-201ENST00000223398 CEP131Q9UPN4 1083 aa21.57■■□□□ 1.04
CLIP2-201ENST00000223398 SMARCC1Q92922 1105 aaPredicted RBP21.57■■□□□ 1.04
CLIP2-201ENST00000223398 NLRP3Q96P20 1036 aa21.57■■□□□ 1.04
CLIP2-201ENST00000223398 ARGLU1Q9NWB6 273 aaPredicted RBP21.57■■□□□ 1.04
CLIP2-201ENST00000223398 TTF1Q15361 905 aaPredicted RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms