RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KATNAL2Q8IYT4 538 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 IPMKQ8NFU5 416 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NPLOC4Q8TAT6 608 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 THAP6Q8TBB0 222 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SPPL2AQ8TCT8 520 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DGAT2Q96PD7 388 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TGM7Q96PF1 710 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FCRL4Q96PJ5 515 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CCM2Q9BSQ5 444 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CHIAQ9BZP6 476 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM234AQ9H0X4 552 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PCIF1Q9H4Z3 704 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ACSL6Q9UKU0 697 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MED14O60244 1454 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NSG1A0A0A6YYJ2 146 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM196BA6NMK8 535 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MID1O15344 667 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 IRAK2O43187 625 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CAMTA2O94983 1202 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HOXB2P14652 356 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NSG1P42857 185 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CLCN5P51795 746 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 F2RL1P55085 397 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RPS15AP62244 130 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 BNIP2Q12982 314 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 AIMP2Q13155 320 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RAB32Q13637 225 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SIM2Q14190 667 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 WSCD2Q2TBF2 565 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM225Q6GV28 225 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ANKS1BQ7Z6G8 1248 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CMTM4Q8IZR5 234 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD2AQ8NA29 543 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FBXO30Q8TB52 745 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GMLQ99445 158 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ABCG8Q9H221 673 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 WDR26Q9H7D7 661 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TM9SF3Q9HD45 589 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RAB6BQ9NRW1 208 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CNOT11Q9UKZ1 510 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 AGAP1Q9UPQ3 857 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ICKQ9UPZ9 632 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TRAF6Q9Y4K3 522 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM230AA0A1W2PPH8 454 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 E9PI62 339 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM227AF5H4B4 570 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ANXA4P09525 319 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RPL13AP40429 203 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PRCPP42785 496 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NOVA1P51513 510 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 EIF2B1Q14232 305 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FGFBP1Q14512 234 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD10Q14728 455 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF470Q6ECI4 717 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF549Q6P9A3 640 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CNKSR3Q6P9H4 555 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC27A1Q6PCB7 646 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PAPD4Q6PIY7 484 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZC3HAV1Q7Z2W4 902 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TRAPPC6BQ86SZ2 158 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 OR7G2Q8NG99 324 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 COQ8AQ8NI60 647 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GPR152Q8TDT2 470 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ST8SIA2Q92186 375 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KAT2BQ92831 832 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 EGLN1Q9GZT9 426 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RSPH9Q9H1X1 276 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PPA2Q9H2U2 334 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 C12orf65Q9H3J6 166 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NXT1Q9UKK6 140 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ERVK-19Q9WJR5 959 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 UGT2A1Q9Y4X1 527 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MAB21L2Q9Y586 359 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 COL17A1Q9UMD9 1497 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NPIPA2E9PIF3 369 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NPIPA3F8WFD2 350 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 AURKAO14965 403 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC19A2O60779 497 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ADH1BP00325 375 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MMP3P08254 477 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 BGNP21810 368 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HTR2AP28223 471 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ALDH3B2P48448 385 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RPS23P62266 143 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HTRA4P83105 476 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ECT2LQ008S8 904 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 FADDQ13158 208 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NR6A1Q15406 480 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 EIPR1Q53HC9 387 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM65Q6PI78 240 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF517Q6ZMY9 492 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ARCQ7LC44 396 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NLRC3Q7RTR2 1065 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC26A11Q86WA9 606 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SNX29P2Q8IUI4 249 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PHOSPHO2Q8TCD6 241 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HELQQ8TDG4 1101 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ADAMTS15Q8TE58 950 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF431Q8TF32 576 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TSEN15Q8WW01 171 aaKnown RBP2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms