RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ADAM29	Q9UKF5	820 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	PILRA	Q9UKJ1	303 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	NDUFAF1	Q9Y375	327 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823		R4GN57	208 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	VCAN	P13611	3396 aa		11.25	□□□□□ -0.61
CLN6-223	ENST00000637823	LAMA1	P25391	3075 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	IGHV1OR21-1	A0A087WYE8	117 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	LRIT2	A6NDA9	550 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	CFAP73	A6NFT4	308 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	ANKRD65	E5RJM6	399 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SAP18	O00422	153 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NR5A2	O00482	541 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	AIM2	O14862	343 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NDUFS4	O43181	175 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SIGLEC6	O43699	453 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PCDH7	O60245	1069 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NRP2	O60462	931 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	CTSV	O60911	334 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SERPIND1	P05546	499 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	KRT16	P08779	473 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	ZNF883	P0CG24	379 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PRPS1L1	P21108	318 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	TACR1	P25103	407 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	IL12A	P29459	219 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PPM1F	P49593	454 aa	Predicted RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	C21orf58	P58505	322 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	STXBP1	P61764	594 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PPP1CA	P62136	330 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	GPLD1	P80108	840 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PWP1	Q13610	501 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	RCAN2	Q14206	197 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PTGR1	Q14914	329 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	ADPRM	Q3LIE5	342 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	MMEL1	Q495T6	779 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	COQ5	Q5HYK3	327 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PLA2G2C	Q5R387	149 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	LAIR1	Q6GTX8	287 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	IRGC	Q6NXR0	463 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	CARF	Q8N187	725 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	PCYOX1L	Q8NBM8	494 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	RBM15B	Q8NDT2	890 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SRFBP1	Q8NEF9	429 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	WDR48	Q8TAF3	677 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NT5C	Q8TCD5	201 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SLC13A3	Q8WWT9	602 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NCSTN	Q92542	709 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	RCN3	Q96D15	328 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SPDL1	Q96EA4	605 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	TMEM74	Q96NL1	305 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	TSSK3	Q96PN8	268 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	TRAPPC9	Q96Q05	1148 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	OR2A5	Q96R48	311 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	ZFYVE21	Q9BQ24	234 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	GTPBP2	Q9BX10	602 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	REXO4	Q9GZR2	422 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	CHRNA10	Q9GZZ6	450 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	CLMP	Q9H6B4	373 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	SLC52A3	Q9NQ40	469 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	EVA1B	Q9NVM1	165 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NDE1	Q9NXR1	346 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	MCM8	Q9UJA3	840 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	GMEB2	Q9UKD1	530 aa		11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	WBP11	Q9Y2W2	641 aa	Known RBP	11.24	□□□□□ -0.61
CLN6-223	ENST00000637823	NUP214	P35658	2090 aa	Predicted RBP	11.23	□□□□□ -0.61
CLN6-223	ENST00000637823		A0A1W2PP18	115 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	GNG14	A0A1W2PPG7	69 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	TLCD2	A6NGC4	264 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	CCDC154	A6NI56	674 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	SLC9B1P1	A6NJY1	282 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	FBP2	O00757	339 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	PLPP1	O14494	284 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	ANGPT2	O15123	496 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	CAPN5	O15484	640 aa	Predicted RBP	11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	GSC2	O15499	205 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	CFLAR	O15519	480 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	B4GAT1	O43505	415 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	IL6	P05231	212 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	KLK1	P06870	262 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	HOXB3	P14651	431 aa	Predicted RBP	11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	PVR	P15151	417 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	ST6GAL1	P15907	406 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	ENG	P17813	658 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	HNRNPH1	P31943	449 aa	Known RBP	11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	BSG	P35613	385 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	CPOX	P36551	454 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	GSTM5	P46439	218 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	RGS1	Q08116	209 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	TGM3	Q08188	693 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	CYP4F3	Q08477	520 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	HYAL2	Q12891	473 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	SQSTM1	Q13501	440 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	ART3	Q13508	389 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	SUZ12	Q15022	739 aa	Known RBP	11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	VPS26B	Q4G0F5	336 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	DNAL1	Q4LDG9	190 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	TOR1AIP1	Q5JTV8	583 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	MANEA	Q5SRI9	462 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	CCNYL2	Q5T2Q4	361 aa		11.23	□□□□□ -0.61
CLN6-223	ENST00000637823	OR4C11	Q6IEV9	310 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms