RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ATG9BQ674R7 924 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 SLCO4C1Q6ZQN7 724 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 ASPGQ86U10 573 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 LURAP1LQ8IV03 231 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 SRRM1Q8IYB3 904 aaKnown RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 KRT78Q8N1N4 520 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 METTL27Q8N6F8 245 aaPredicted RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 EFCAB3Q8N7B9 438 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 CCDC63Q8NA47 563 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 MFSD9Q8NBP5 474 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 CAMKVQ8NCB2 501 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 ZNF740Q8NDX6 193 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 LRFN5Q96NI6 719 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 GPR87Q9BY21 358 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 IQCGQ9H095 443 aaKnown RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 CHST8Q9H2A9 424 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 SPNS1Q9H2V7 528 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 CENPHQ9H3R5 247 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 SYNPO2LQ9H987 977 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 DCDC2Q9UHG0 476 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 VPS4AQ9UN37 437 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 RUVBL1Q9Y265 456 aaKnown RBP16.95■□□□□ 0.3
CLN3-247ENST00000636351 SEC16AO15027 2179 aa16.95■□□□□ 0.3
CLN3-247ENST00000636351 A0A1B0GX78 115 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 FITM1A5D6W6 292 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 ARGFXA6NJG6 315 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 DSCR3O14972 297 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 NDUFS4O43181 175 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 SIX3O95343 332 aaPredicted RBP16.94■□□□□ 0.3
CLN3-247ENST00000636351 SLC35G6P0C7Q6 338 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 GNLYP22749 145 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 CXCR2P25025 360 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 CCT5P48643 541 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 IRF8Q02556 426 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 SLC9A5Q14940 896 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 MUM1Q2TAK8 710 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 PRTGQ2VWP7 1150 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 CEP85LQ5SZL2 805 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 SYVN1Q86TM6 617 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 MYLK4Q86YV6 388 aaPredicted RBP16.94■□□□□ 0.3
CLN3-247ENST00000636351 OR4K1Q8NGD4 311 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 CPT1CQ8TCG5 803 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 THAP4Q8WY91 577 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 ZBTB9Q96C00 473 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 ZIM3Q96PE6 472 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 SLC25A23Q9BV35 468 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 TMEM109Q9BVC6 243 aa16.94■□□□□ 0.3
CLN3-247ENST00000636351 GPN3Q9UHW5 284 aaPredicted RBP16.94■□□□□ 0.3
CLN3-247ENST00000636351 SPTAN1Q13813 2472 aaKnown RBP16.94■□□□□ 0.3
CLN3-247ENST00000636351 A8MT66 165 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 STX16-NPEPL1H3BU86 382 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 STX16O14662 325 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 RGS16O15492 202 aaPredicted RBP16.93■□□□□ 0.3
CLN3-247ENST00000636351 LCMT2O60294 686 aaKnown RBP16.93■□□□□ 0.3
CLN3-247ENST00000636351 SCTRP47872 440 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 PIK3CGP48736 1102 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 PGDP52209 483 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 DCDP81605 110 aaKnown RBP16.93■□□□□ 0.3
CLN3-247ENST00000636351 RGS1Q08116 209 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 CHIT1Q13231 466 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 GTF2H2Q13888 395 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 PCBP2Q15366 365 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLN3-247ENST00000636351 NDUFA9Q16795 377 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 NADK2Q4G0N4 442 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 C4orf17Q53FE4 359 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 PAGE2BQ5JRK9 111 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 GTF2H2CQ6P1K8 395 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 GOLGA7Q7Z5G4 137 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 VN1R4Q7Z5H5 301 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 TRABD2AQ86V40 505 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 ZCCHC10Q8TBK6 192 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 SLC13A3Q8WWT9 602 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 CCT6BQ92526 530 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 PTCD3Q96EY7 689 aaKnown RBP16.93■□□□□ 0.3
CLN3-247ENST00000636351 C10orf90Q96M02 699 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 GBP5Q96PP8 586 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 MACROD1Q9BQ69 325 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 DPH2Q9BQC3 489 aaPredicted RBP16.93■□□□□ 0.3
CLN3-247ENST00000636351 EFCAB11Q9BUY7 163 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 ACSS2Q9NR19 701 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 IFT80Q9P2H3 777 aaPredicted RBP16.93■□□□□ 0.3
CLN3-247ENST00000636351 GRID1Q9ULK0 1009 aa16.93■□□□□ 0.3
CLN3-247ENST00000636351 TEX15Q9BXT5 2789 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 KCNE1BA0A087WTH5 132 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 AGFG2O95081 481 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 MYL2P10916 166 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 EPORP19235 508 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 ATP5F1P24539 256 aaPredicted RBP16.92■□□□□ 0.3
CLN3-247ENST00000636351 CCL11P51671 97 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 DOC2AQ14183 400 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 HIST2H2ACQ16777 129 aaPredicted RBP16.92■□□□□ 0.3
CLN3-247ENST00000636351 NKAIN1Q4KMZ8 207 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 BEND6Q5SZJ8 279 aaPredicted RBP16.92■□□□□ 0.3
CLN3-247ENST00000636351 GARNL3Q5VVW2 1013 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 HIST2H2BCQ6DN03 193 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 HIST2H2AA3Q6FI13 130 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 FAM198BQ6UWH4 519 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 TMIGD1Q6UXZ0 262 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLN3-247ENST00000636351 GALNT11Q8NCW6 608 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms