RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 A0A1W2PQL4 384 aaPredicted RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 MROH6A6NGR9 719 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 CLDN24A6NM45 220 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 WWP2O00308 870 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 RFX3P48380 749 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 UBXN11Q5T124 520 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 HECTD3Q5T447 861 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ANXA8L1Q5VT79 327 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 BHLHB9Q6PI77 547 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 TRMT11Q7Z4G4 463 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 FKBP10Q96AY3 582 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ZBED3Q96IU2 234 aaPredicted RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 ZDHHC6Q9H6R6 413 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 C12orf4Q9NQ89 552 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ADARB2Q9NS39 739 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 HSPE1-MOB4S4R3N1 261 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SCN9AQ15858 1988 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ANKRD28O15084 1053 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ICMTO60725 284 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 CATP04040 527 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 LAMP1P11279 417 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ETFAP13804 333 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 PAICSP22234 425 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 CNR2P34972 360 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 BUD31P41223 144 aaPredicted RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 AKR1D1P51857 326 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 CLDN8P56748 225 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SMAD3P84022 425 aaKnown RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 TEAD4Q15561 434 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SETMARQ53H47 684 aaPredicted RBP10.67□□□□□ -0.7
CLN3-244ENST00000636147 HMGN2P46Q86SG4 172 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 TTC9BQ8N6N2 239 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 KCTD7Q96MP8 289 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 ZFP3Q96NJ6 502 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 FNDC11Q9BVV2 318 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 SLC25A37Q9NYZ2 338 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 CORO2BQ9UQ03 480 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 GRIP1Q9Y3R0 1128 aa10.67□□□□□ -0.7
CLN3-244ENST00000636147 PTPRFP10586 1907 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 TNFRSF10AO00220 468 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 GFRA2O00451 464 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 AXIN1O15169 862 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 ALDH2P05091 517 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 NR2F1P10589 423 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 ITGAMP11215 1152 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CXCR4P61073 352 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 SLAMF1Q13291 335 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 MAB21L1Q13394 359 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 KRT33BQ14525 404 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CLEC12AQ5QGZ9 265 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 MZT2AQ6P582 158 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 AGMOQ6ZNB7 445 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 LAX1Q8IWV1 398 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 ENTHD1Q8IYW4 607 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CLP1Q92989 425 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 CCDC120Q96HB5 630 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 PAWRQ96IZ0 340 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 SLC35A5Q9BS91 424 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 SEC14L3Q9UDX4 400 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 PGAP2Q9UHJ9 254 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 LSM7Q9UK45 103 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 KCNE2Q9Y6J6 123 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 NHSL1Q5SYE7 1610 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 OR2A25A4D2G3 310 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 PRR23AA6NEV1 266 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CDK1P06493 297 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 ADORA3P0DMS8 318 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 SERPINA4P29622 427 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 XKP51811 444 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 DCDC1P59894 354 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 PURAQ00577 322 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 PRSS36Q5K4E3 855 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 NXNL2Q5VZ03 156 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 RFPL4BQ6ZWI9 263 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 ZNF438Q7Z4V0 828 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 DNAJB8Q8NHS0 232 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 ASZ1Q8WWH4 475 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 UPF1Q92900 1129 aaKnown RBP eCLIP10.66□□□□□ -0.7
CLN3-244ENST00000636147 COQ8BQ96D53 544 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 NARS2Q96I59 477 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 TMED9Q9BVK6 235 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CHIAQ9BZP6 476 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 MRPL39Q9NYK5 338 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 ZNF225Q9UK10 706 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 RUVBL1Q9Y265 456 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 HCN4Q9Y3Q4 1203 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 TTC3P53804 2025 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 LOC285095A0A1B0GVY8 99 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 UPK1AO00322 258 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 KMOO15229 486 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 SLC28A2O43868 658 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 NME6O75414 186 aaPredicted RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 TOXO94900 526 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CH25HO95992 272 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 TGFB1P01137 390 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 PPP2R1BP30154 601 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 CDK6Q00534 326 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 RPL6Q02878 288 aaKnown RBP10.66□□□□□ -0.7
CLN3-244ENST00000636147 XKR7Q5GH72 579 aa10.66□□□□□ -0.7
CLN3-244ENST00000636147 VARS2Q5ST30 1063 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms